YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CTNS
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRNWLTIFI LFPLKLVEKC ESSVSLTVPP VVKLENGSST NVSLTLRPPL NATLVITFEI  60
   61 TFRSKNITIL ELPDEVVVPP GVTNSSFQVT SQNVGQLTVY LHGNHSNQTG PRIRFLVIRS 120
  121 SAISIINQVI GWIYFVAWSI SFYPQVIMNW RRKSVIGLSF DFVALNLTGF VAYSVFNIGL 180
  181 LWVPYIKEQF LLKYPNGVNP VNSNDVFFSL HAVVLTLIII VQCCLYERGG QRVSWPAIGF 240
  241 LVLAWLFAFV TMIVAAVGVI TWLQFLFCFS YIKLAVTLVK YFPQAYMNFY YKSTEGWSIG 300
  301 NVLLDFTGGS FSLLQMFLQS YNNDQWTLIF GDPTKFGLGV FSIVFDVVFF IQHFCLYRKR 360
  361 PGYDQLN

Type	Start	End	Confidence
Non-Cytoplasmic	1	121	0.82
Transmembrane Helix	122	143	0.79
Cytoplasmic	144	157	0.71
Transmembrane Helix	158	182	0.79
Non-Cytoplasmic	183	206	0.86
Transmembrane Helix	207	226	0.95
Cytoplasmic	227	234	0.82
Transmembrane Helix	235	256	0.89
Non-Cytoplasmic	257	261	0.54
Transmembrane Helix	262	282	0.76
Cytoplasmic	283	296	0.75
Transmembrane Helix	297	318	0.83
Non-Cytoplasmic	319	335	0.86
Transmembrane Helix	336	356	0.92
Cytoplasmic	357	367	0.92