YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|166853454, gi...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	28	0.87
Non-Cytoplasmic	29	42	0.88
Transmembrane Helix	43	66	0.85
Cytoplasmic	67	79	0.90
Transmembrane Helix	80	100	0.89
Non-Cytoplasmic	101	124	0.84
Transmembrane Helix	125	147	0.89
Cytoplasmic	148	154	0.87
Transmembrane Helix	155	178	0.89
Non-Cytoplasmic	179	187	0.85
Transmembrane Helix	188	209	0.87
Cytoplasmic	210	226	0.87
Transmembrane Helix	227	248	0.92
Non-Cytoplasmic	249	265	0.92
Transmembrane Helix	266	287	0.92
Cytoplasmic	288	293	0.93
Transmembrane Helix	294	313	0.91
Non-Cytoplasmic	314	318	0.69
Transmembrane Helix	319	338	0.93
Cytoplasmic	339	349	0.83
Transmembrane Helix	350	370	0.92
Non-Cytoplasmic	371	386	0.77
Transmembrane Helix	387	408	0.91
Cytoplasmic	409	446	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKVKKIFLS FMILIFVVTS GICTAKAADQ ITPEKVATAI DNVWVLVSAF LVFFMQAGFA  60
   61 MVEAGFTRAK NASNIVMKNL MDFAIGSVMF WLVGFAIMFG KDAGGFIGTS GFFFSDSFEH 120
  121 LELSIPLMSF LIFQTVFAAT AATIVSGAMA ERTKFVAYCI YSAVISLIIY PVVGHWAWGG 180
  181 GWLSKLGFID FAGSTVVHSV GGWAALIGAK MLGPRIGKYT KDGKVNAIPG HSITLAALGT 240
  241 FILWFGWFGF NPGSTLSGMS DKIGDIAVNT NLAAAMGATL AMIYTWLKYK KPDVSMTLNG 300
  301 ALAGLVAITA GCASVSTWGA AIIGGLAGIL VVISVEFIDK KLKIDDPVGA ISVHGVCGAF 360
  361 GTLMVGLFAT EGGLFYGGGI KQFLVQLAGV ASTFVWTTVT AFILFAIIKL TVGLRVSEEE 420
  421 EVEGLDVTEH GATAYGDFVT KSEVVN