YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114384177, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRIADSLF AFTGPQQQCL PRVPKLASAR VSPGVYAVRP INLLLKGSTY RRSRCVAPVK  60
   61 RRIGCIKAVA VPVAPPSADS AEGREQLAES YGFRQIGEDL PDNVTLKDIM DTLPKEVFEI 120
  121 DDVKAWKSVL ISVTSYTLGL FMIAKAPWYL LPLAWAWTGT AITGFFVIGH DCAHKSFSKN 180
  181 KLVEDIVGTL AFLPLVYPYE PWRFKHDRHH AKTNMLVHDT AWQPVPPQEF DSSPTLRKAI 240
  241 IFGYGPIRPW LSIAHWVNWH FNLKKFRASE VNRVKISLAC VFAFMAVGWP LIIYKVGILG 300
  301 WVKFWLMPWL GYHFWMSTFT MVHHTAPHIP FKPADEWNAA QAQLNGTVHC DYPSWIEILC 360
  361 HDINVHIPHH ISPRIPSYNL RAAHKSIQEN WGKYTNLATW NWRLMKTIMT VCHVYDKEEN 420
  421 YIPFDRLAPE ESQPITFLKK AMPNYTA

Type	Start	End	Confidence
Cytoplasmic	1	124	0.96
Transmembrane Helix	125	146	0.78
Non-Cytoplasmic	147	152	0.66
Transmembrane Helix	153	173	0.86
Cytoplasmic	174	273	0.79
Transmembrane Helix	274	293	0.94
Non-Cytoplasmic	294	304	0.70
Transmembrane Helix	305	326	0.79
Cytoplasmic	327	447	0.96