YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114798543, gi...
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSDYIPPK VWTWNKDAGG RFANINRPIA GPTQEKALPV GKHPLQLYSL GTPNGVKVTV  60
   61 MLEELLALGY SGAEYDAWLI NIGQGDQFTS GFVDINPNSK IPALLDRSVD SGVRVFESGA 120
  121 ILMYLAEKFG AFLPKSQPKR AEALSWLFWQ MGSAPFLGGG FGHFYAYAPV KIQYAIDRYA 180
  181 METKRQMDVL DRHLAIHEYM AGDEYTIADM AIWPWYGALA QGVLYEAGEF LEVDSYKNVQ 240
  241 RWTTQIADRP AVKRGRMVNR TFGKPESQLL ERHDASDFDT KTQDKLQPGS

Type	Start	End	Confidence
Cytoplasmic	1	145	0.54
Transmembrane Helix	146	166	0.62
Non-Cytoplasmic	167	290	0.82