YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114690659
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKEDSGSEQ FHHPPHSLQI LTRGSTCPKG GRRTVEGNRE HINTERATAA PTVTATFLAG  60
   61 MGGASEFGSQ QIPLSRPCGL ASGAGEQGAS IKRRDPQVMR QGRLPSGTGL SIAMAQQWSL 120
  121 QRLAGRHPQD SYEDSTQSSI FTYTNSNSTR DPFEGPNYHI APRWVYHLTS VWMIFVVIAS 180
  181 VFTNGLVLAA TMKFKKLRHP LNWILVNLAV ADLAETVIAS TISVVNQVSG YFVLGHPMCV 240
  241 LEGYTVSLCG ITGLWSLAII SWERWLVVCK PFGNVRFDAK LAIIGIAFSW IWSAVWTAPP 300
  301 IFGWSRYWPH GLKTSCGPDV FSGSSYPGVQ SYMIVLMVTC CIIPLAIIVL CYLQVWLAIR 360
  361 AVAKQQKESE STQKAEKEVT RMVVVMIFAY CVCWGPYTFF ACFAAANPGY AFHPLMAALP 420
  421 AYFAKSATIY NPVIYVFMNR QFRNCILQLF GKKVDDGSEL SSASKTEVSS VSSVSPA

Type	Start	End	Confidence
Cytoplasmic	1	101	0.68
Transmembrane Helix	102	120	0.54
Non-Cytoplasmic	121	167	0.96
Transmembrane Helix	168	190	0.89
Cytoplasmic	191	202	0.82
Transmembrane Helix	203	224	0.90
Non-Cytoplasmic	225	239	0.84
Transmembrane Helix	240	262	0.86
Cytoplasmic	263	280	0.85
Transmembrane Helix	281	302	0.89
Non-Cytoplasmic	303	332	0.95
Transmembrane Helix	333	356	0.93
Cytoplasmic	357	381	0.90
Transmembrane Helix	382	404	0.87
Non-Cytoplasmic	405	414	0.72
Transmembrane Helix	415	437	0.77
Cytoplasmic	438	477	0.91