YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114689682
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLDLCLLEC CARCLVGAPF ASLVATGLCF FGVALFCGCG HEALTGTEKL IETYFSKNYQ  60
   61 DYEYLINVIH AFQYVIYGTA SFFFLYGALL LAEGFYTTGA VRQIFGDYKT TICGKGLSAT 120
  121 VTGGQKGRGS RGQHQAHSLE RVCHCLGKWL GHPDKFVGIT YALTVVWLLV FACSAVPVYI 180
  181 YFNTWTTCQS IAFPSKTSAS IGSLCADARM YGVLPWNAFP GKVCGSNLLS ICKTAEFQMT 240
  241 FHLFIAAFVG AAATLVSLLT FMIAATYNFA VLKLMGRGTK F

Type	Start	End	Confidence
Cytoplasmic	1	14	0.87
Transmembrane Helix	15	37	0.85
Non-Cytoplasmic	38	73	0.84
Transmembrane Helix	74	96	0.83
Cytoplasmic	97	156	0.92
Transmembrane Helix	157	181	0.88
Non-Cytoplasmic	182	243	0.88
Transmembrane Helix	244	270	0.86
Cytoplasmic	271	281	0.84