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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114687614
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.57
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRPQGLLWL PLLFTPVCVM LNSNVLLWLT ALAIKFTLID SQAQYPVVNT NYGKIRGLRT  60
   61 PLPNEILGPV EQYLGVPYAS PPTGERRFQP PEPPSSWTGI RNTTQFAAVC PQHLDERSLL 120
  121 HDMLPIWFTA NLDTLMTYVQ DQNEDCLYLN IYVPTEDVTK NSKKPVMVYI HGGSYMEGTG 180
  181 NMIDGSILAS YGNVIVITIN YRLGILGFLS TGDQAAKGNY GLLDQIQALR WIEENVGAFG 240
  241 GDPKRVTIFG SGAGASCVSL LTLSHYSEGL FQKAIIQSGT ALSSWAVNHQ PAKYTRILAD 300
  301 KVGCNMLDTT DMVECLRNKN YKELIQQTIT PATYHIAFGP VIDGDVIPDD PQILMEQGEF 360
  361 LNYDIMLGVN QGEGLKFVDG IVDNEDGVTP NDFDFSVSNF VDNLYGYPEG KDTLRETIKF 420
  421 MYTDWADKEN PETRRKTLVA LFTDHQWVAP AVATADLHAQ YGSPTYFYAF YHHCQSEMKP 480
  481 SWADSAHGDE VPYVFGIPMI GPTELFSCNF SKNDVMLSAV VMTYWTNFAK TGDPNQPVPQ 540
  541 DTKFIHTKPN RFEEVAWSKY NPKDQLYLHI GLKPRVRDHY RATKVAFWLE LVPHLHNLNE 600
  601 IFQYVSTTTK VPPPDMTSFP YGTRRSPAKI WPTTKRPAIT PANNPKHSKD PHKTGPEDTT 660
  661 VLIETKRDYS TELSVTIAVG ASLLFLNILA FAALYYKKDK RRHETHRRPS PQRNTTNDIA 720
  721 HIQNEEIMSL QMKQLEHDHE CESLQAHDTL RLTCPPDYTL TLRRSPDDIP LMTPNTITMI 780
  781 PNTLTGMQPL HTFNTFSGGQ NSTNLPHGHS TTRV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle