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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114685952, gi...
Protein type: Transmembrane
Type Confidence: 0.58
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNLLTEKCI SSHNFHQKVI KQRMEKVDSR YFKDGAVKKP YSAKTLSNKK SSASFGIRRE  60
   61 LPSTSHLVQY RGTHTCTRQG RLRELRIRCV ARKFLYLWIR MTFGRVFPSK ARFYYEQRLL 120
  121 QKVFEEWKEE WWVFQHEWKL CVRADCHYRY YLYNLMFQTW KTYVRQQQEM RNKYIRAEVH 180
  181 DAKQKMRQAW KSWLIYVVVR RTKLQMQTTA LEFRQRIILR VWWSTWRQRL GQVRVSRALH 240
  241 ASALKHRALS LQVQAWSQWR EQLLYVQKEK QKVVSAVKHH QHWQKRRFLK AWLEYLQVRR 300
  301 VKRQQDEMAE RFHHVTVLQI HFCDWQQAWE RRESLYAHHA QVEKLARKMA LRRAFTHWKH 360
  361 YMLLCAEEAA QFEMAEEHHR HSQLLLHRFW NLWRSQIEQK KERELLPLLH AAWDHYRIAL 420
  421 LCKCIKLWVQ YTQKRRYKQL LQARADGHFQ QRALPAAFHT WNRLWRWCHQ ENVLSARATR 480
  481 FHRETLEKQV FSLWRQKMFQ HRENHLAERM AILHAERQLL YRSWFMWHQQ AAARHQEQEW 540
  541 QTVACAHHRH GRLKKAFCLW RESAQGLRTE RTGRVRAAEF HMAQLLRWAW SQWRECLALR 600
  601 GAERQKLMRA DLHHQHSVLH RALQAWVTYQ GRVRSILREV AARESQHNRQ LLRGALRRWK 660
  661 ENTMARVDEA KKTFQASTHY RRTICSKVLV QWWEAVSVQI YYRQQEDCAI WEAQKVLDRG 720
  721 CLRTWFQRWW DCSRRSAQQR LQLERAVQHH RRQLLLEGLA RWKMHHLQCV RKRLLHRQST 780
  781 QLLAQRLSRT CFRQWRQQLA ARRQEQRATV RALWFWAFSL QAKVWATWLA FVLERRRKKA 840
  841 RLQRALQAYQ GQLLQEGATR LLRFAASMKA SRQQLQAQQQ VQAAHSLHRA VHRCATLWKQ 900
  901 KVLGRGGKPQ PLAAIAPSRK VTFEGPLLNR IAAGAGDATL ETKRPQASRP PGALGRLAAE 960
  961 EPHALELNTA HSARKQPRRP HFLLEPAQSQ RPQKPQEHGL GMAQPAAPSL TRPFLAEAPT1020
 1021 ALVPHSPLPG ALSSAPGPKQ PPTASTGLEL LLLPPSSFMP CGAAAPARMS AQRATPRDKP1080
 1081 PVPSSLASVP DPHLLLPGDF SATRAGPGLS TAGSLDLEAE LEEIQQQLLH YQTTKQNLWS1140
 1141 CRRQASSLRR WLELNREEPG PEDQEVEQQV QKELEQVEMQ IQLLAEELQA QRQPIGACVA1200
 1201 RIQALRQALC 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle