YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114684605, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLAFLKTQ FVLHLLVGFV FVVSGLVINF VQLCTLALWP VSKQLYRRLN CRLAYSLWSQ  60
   61 LVMLLEWWSC TECTLFTDQA TVERFGKEHA VIILNHNFEI DFLCGWTMCE RFGVLGSSKV 120
  121 LAKKELLYVP LIGWTWYFLE IVFCKRKWEE DRDTVVEGLR RLSDYPEYMW FLLYCEGTRF 180
  181 TETKHRVSME VAAAKGLPVL KYHLLPRTKG FTTAVKCLRG TVAAVYDVTL NFRGNKNPSL 240
  241 LGILYGKKYE ADMCVRRFPL EDIPLDEKGA AQWLHKLYQE KDALQEIYNQ KGVFPGEQFK 300
  301 PARRPWTLLN FLSWATILLS PLFSFVLGVF ASGSPLLILT FLGFVGAASF GVRRLIGVTE 360
  361 IEKGSSYGNQ EFKKKE

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.76
Transmembrane Helix	15	39	0.86
Cytoplasmic	40	307	0.92
Transmembrane Helix	308	329	0.91
Non-Cytoplasmic	330	335	0.71
Transmembrane Helix	336	357	0.89
Cytoplasmic	358	376	0.97