YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114684359
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.48
Transmembrane Helix	8	29	0.91
Non-Cytoplasmic	30	39	0.42
Transmembrane Helix	40	68	0.72
Cytoplasmic	69	72	0.27
Transmembrane Helix	73	102	0.70
Non-Cytoplasmic	103	121	0.44
Transmembrane Helix	122	141	0.84
Cytoplasmic	142	157	0.46
Transmembrane Helix	158	182	0.88
Non-Cytoplasmic	183	188	0.45
Transmembrane Helix	189	210	0.92
Cytoplasmic	211	301	0.63
Transmembrane Helix	302	323	0.82
Non-Cytoplasmic	324	364	0.78
Transmembrane Helix	365	387	0.72
Cytoplasmic	388	407	0.82
Transmembrane Helix	408	429	0.94
Non-Cytoplasmic	430	443	0.84
Transmembrane Helix	444	462	0.75
Cytoplasmic	463	469	0.67
Transmembrane Helix	470	491	0.91
Non-Cytoplasmic	492	508	0.73
Transmembrane Helix	509	533	0.87
Cytoplasmic	534	805	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAVLDTADI AIVALYFILV MCIGFFAMWK SNRSTVSGYF LAGRSMTWVA IGASLFVSNI  60
   61 GSEHFIGLAG SGAASGFAVG AWEFNALLLL QLLGWVFIPI YIRSGVYTMP EYLSKRFGGH 120
  121 RIQVYFAALS LILYIFTKLS VDLYSGALFI QESLGWNLYV SVILLIGMTA LLTVTGGLVA 180
  181 VIYTDTLQAL LMIIGALTLM IISIMEIGGF EEVKRRYMLA SPDVTSILLT YNLSNTNSCN 240
  241 VSPKKEALKM LRNPTDEDVP WPGFILGQTP ASVWYWCADQ VIVQRVLAAK NIAHAKGSTL 300
  301 MAGFLKLLPM FIIVVPGMIS RILFTDDIAC INPEHCMLVC GSRAGCSNIA YPRLVMKLVP 360
  361 VGLRGLMMAV MIAALMSDLD SIFNSASTIF TLDVYKLIRK SASSRELMIV GRIFVAFMVV 420
  421 ISIAWVPIIV EMQGGQMYLY IQEVADYLTP PVAALFLLAI FWKRCNEQGA FYGGMAGFVL 480
  481 GAVRLILAFA YRAPECDQPD NRPGFIKDIH YMYVATGLFW VTGLITVIVS LLTPPPTKEQ 540
  541 IRTTTFWSKK NLVVKENCSP KEEPYKMQEK SILRCSENNE TINHIIPNGK SEDSIKGLQP 600
  601 EDVNLLVTCR EEGNPVASLG HSEAETPVDA YSNGQAALMG EKERKKETDD GGRYWKFIDW 660
  661 FCGFKSKSLS KRSLRDLMEE EAVCLQMLEE TRQVKPETAA TLKRTIEALM DRGAIVRDLE 720
  721 NLGERALPYR ISAHSQQHNR GGYFLVDFYA PTAAVESMVE HLSRDIDVIR GNIVKHPLTQ 780
  781 ELKECEGIVP VPLAEKLYST KKRKK