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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114683675
Protein type: Transmembrane
Type Confidence: 0.60
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSKRSVSSR HHSLSSYEIM FAALFAILVV LCAGLIAVSC LTIKESQRGA TLGQSHEARG  60
   61 TFKITSGVTY NPNLQDKLSV DFKVLAFDLQ QMIDEIFLSS NLKNEYKNSR VLQFENGSII 120
  121 VIFDLFFAQW VSDENVKEEL IQGLEANKSS QLVTFHIDLN SVDILDKLTT TSHLASPGNV 180
  181 SIECLPGSSP CTDALTCIKA DLFCDGEVNC PDGSDEDNKM CATVCDGRFL LTGSSGSFQA 240
  241 THYPKPSETS VVCQWIIRVN QGLSIKLSFD DFNTYYTDIL DIYEGVGSSK ILRASIWETN 300
  301 PGTIRIFSNQ VTATFLIESD ESDYVGFNVT YTAFNSSELN NYEKINCNFE DGFCFWVQDL 360
  361 NDDNEWERIQ GSTFSPFTGP NFDHTFGNAS GFYISTPTGP GGRQERVGLL SLPLDPTLEP 420
  421 ACLSFWYHMY GENVHKLSIN ISNDQNMEKT VFQKEGNYGD NWNYGQVTLN ETVKFKVAFN 480
  481 AFKNKILSDI ALDDISLTYG ICNGSLYPEP TLVPTPPPEL PTDCGGPFEL WEPNTTFSSM 540
  541 NFPNSYPNLA FCVWILNAQK GKNIQLHFQE FDLENINDVV EIRDGEEADS LLLAVYTGPG 600
  601 PVKDVFSTTN RMTVLLITND VLARGGFKAN FTTGYHLGIP EPCKEDHFQC KNGECVPLVN 660
  661 LCDGHLHCED GSDEADCVRF FNGTMNNNGL VRFRIQSIWH TACAENWTIQ ISNDVCQLLG 720
  721 LGSGNSSVPI FSTDGGPFVK LNTAPDGHLI LTPSQQCLQD SLIRLQCNHK SCGKKLAAQD 780
  781 ITPKIVGGSN AKEGAWPWVV GLYYGGRLLC GASLVSSDWL VSAAHCVYGR NLEPSKWTAI 840
  841 LGLHMKSNLT SPQTVPRLID EIVINPHYNR RRKDNDIAMM HLEFKVNYTD YIQPICLPEE 900
  901 NQVFPPGRNC SIAGWGTVVY QGTTANILQE ADVPLLSNEK CQQQMPEYNI TENMICAGYE 960
  961 EGGIDSCQGD SGGPLMCQEN NRWFLAGVTS FGYKCALPNR PGVYARVSRF TEWIQSFLH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle