YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114682335
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAERGAQAL RPSFLSSVCL HSSFCACAQF ALRLLVPGSG GSGRGCTHYA CATSAPPLRC  60
   61 FPRKRFFPTQ PLLPLWSLEL CLSRPAAPLL HGPVCQRCFG SPPVRPGHAQ TLRSSSLSLG 120
  121 MAGQFRSYVW DPVLILSQIV LMQTVYYGSL GLWLALVDGL VRSSPSLDQM FDAEILGFST 180
  181 PPGRLSMMSF ILNALTCALG LLYFIRRGKQ CLDFTVTVHF FHLLGCWFYS SRFPSALTWW 240
  241 LVQAVCIALM AVIGEYLCMR TELKEIPLNS APKSNV

Type	Start	End	Confidence
Cytoplasmic	1	133	0.44
Transmembrane Helix	134	150	0.58
Non-Cytoplasmic	151	184	0.83
Transmembrane Helix	185	205	0.93
Cytoplasmic	206	211	0.85
Transmembrane Helix	212	231	0.89
Non-Cytoplasmic	232	238	0.75
Transmembrane Helix	239	259	0.93
Cytoplasmic	260	276	0.96