YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114681892
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKACTYIRSN LDPSNVDSLF YAAQASQALS GCEISISNET KDLLLAAVSE DSSVTQIYHA  60
   61 VAALSGFGLP LASQEALSAL TARLSKEETV LATVQALQTA SHLSQQADLR SIVEEIEDLV 120
  121 ARLDELGGVY LQFEEGLETT ALFVAATYKL MDHVGTEPSI KEDQVIQLMN AIFSKKNFES 180
  181 LSEAFSVASA AAVLSHNRYH MPVVVVPEGS ASDTHEQAIL RLQVTNVLSQ PLTQATVKLE 240
  241 HAKSVASRAT VLQKTSFTPV GDVFELNFMN VKFSSGYYDF LVKVEGDNRY IANTVELRVK 300
  301 ISTEVGITNV DLSTVDKDQS IAPKTTRVTY PAKAKGTFIA DSHQNFALFF QLVDVNTGAE 360
  361 LTPHQTFVRL HNQKTGQEVV FVAEPDNKNV YKFELDTSER KIEFDSASGT YTLYLIIGDA 420
  421 TLKNPILWNV ADVVIKFPEE EAPSTVLSQN LFTPKQEIQH LFREPEKRPP TVVSNTFTAL 480
  481 ILSPLLLLFA LWIRIGANVS NFTFAPSTII FHLGHAAMLG LMYVYWTQLN MFQTLKYLAI 540
  541 LGSVTFLAGN RMLAQQAVKR IAAEQSSRLA KYRTLR

Type	Start	End	Confidence
Non-Cytoplasmic	1	471	0.94
Transmembrane Helix	472	493	0.89
Cytoplasmic	494	503	0.70
Transmembrane Helix	504	526	0.87
Non-Cytoplasmic	527	533	0.80
Transmembrane Helix	534	554	0.86
Cytoplasmic	555	576	0.92