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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114681358
Protein type: Transmembrane
Type Confidence: 0.62
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIMKSHIMK IQYWTKCCRR GEGPWRLPGR GNDIWVSATA RAQRAPAGHL VTRCRAGGQV  60
   61 PGTRGPEGRA PFPHRPRAGR RGHDGTLRGP GSLAPSSRSH FLPGLPNEGA NTTLRWRGQA 120
  121 RPIPPAEPQC RAPEQRRQSS CTIPAFACAA AFLLHLFSSA SAGAMAKPLT DSEKRKQISV 180
  181 RGLAGLGDVA EVRKSFNRHL HFTLVKDRNV ATPRDYFFAL AHTVRDHLVG RWIRTQQHYY 240
  241 ERDPKRIYYL SLEFYMGRTL QNTMVNLGLQ NACDEAIYQL GLDLEELEEI EEDAGLGNGG 300
  301 LGRLAACFLD SMATLGLAAY GYGIRYEFGI FNQKIVNGWQ VEEADDWLRY GNPWEKARPE 360
  361 YMLPVHFYGR VEHTPDGVKW LDTQVVLAMP YDTPVPGYKN NTVNTMRLWS AKAPNDFKLQ 420
  421 DFNVGDYIEA VLDRNLAENI SRVLYPNDNF FEGKELRLKQ EYFVVAATLQ DIIRRFKSSK 480
  481 FGCRDPVRTC FETFPDKVAI QLNDTHPALS IPELMRILVD VEKVDWDKAW EITKKTCAYT 540
  541 NHTVLPEALE RWPVSMFEKL LPRHLEIIYA INQRHLDHVA ALFPGDVDRL RRMSVIEEGD 600
  601 CKRINMAHLC VIGSHAVNGV ARIHSEIVKQ SVFKDFYELE PEKFQNKTNG ITPRRWLLLC 660
  661 NPGLADTIVE KIGEEFLTDL SQLKKLLPLV SDEVFIRDVA KVKQENKLKF SAFLEKEYKV 720
  721 KINPSSMFDV HVKRIHEYKR QLLNCLHVVT LYNRIKRDPA KAFVPRTVMI GGKAAPGYHM 780
  781 AKLIIKLVTS IGDVVNHDPV VGDRLKVIFL ENYRVSLAEK VIPAADLSQQ ISTAGTEASG 840
  841 TGNMKFMLNG ALTIGTMDGA NVEMAEEAGA ENLFIFGLRV EDVEALDRKG YNAREYYDHL 900
  901 PELKQAVDQI SSGFFSPKEP DCFKDIVNML MHHDRFKVFA DYEAYMQCQA QVDQLYRNPK 960
  961 EWTKKVIRNI ACSGKFSSDR TITEYAREIW GVEPSDLQIP PPNIPRD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle