YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114680794
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	104	0.90
Transmembrane Helix	105	124	0.83
Non-Cytoplasmic	125	134	0.71
Transmembrane Helix	135	157	0.83
Cytoplasmic	158	210	0.65
Transmembrane Helix	211	233	0.81
Non-Cytoplasmic	234	262	0.58
Transmembrane Helix	263	283	0.90
Cytoplasmic	284	303	0.90
Transmembrane Helix	304	326	0.91
Non-Cytoplasmic	327	363	0.92
Transmembrane Helix	364	386	0.87
Cytoplasmic	387	451	0.92
Transmembrane Helix	452	472	0.92
Non-Cytoplasmic	473	479	0.77
Transmembrane Helix	480	502	0.91
Cytoplasmic	503	509	0.85
Transmembrane Helix	510	528	0.95
Non-Cytoplasmic	529	545	0.84
Transmembrane Helix	546	566	0.91
Cytoplasmic	567	644	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIGKNTTSK SMEAGSSTEG KYEDEAKHPA FFTLPVVING GATSSGEQDN EDTELMAIYT  60
   61 TENGIAEKSS LAETLDSTGS LDPQRSDMIY TIEDVPPWYL CIFLGLQHYL TCFSGTIAVP 120
  121 FLLADAMCVG YDQWATSQLI GTIFFCVGIT TLLQTTFGCR LPLFQASAFA FLAPARAILS 180
  181 LDKWKCNTTG NCTELLHTEH IWYPRIREIQ GAIIMSSLIE VVIGLLGLPG ALLKYIGPLT 240
  241 ITPTVALIGL SGFQAAGERA GKHWGIAMLT IFLVLLFSQY ARNVKFPLPI YKSKKGWTAY 300
  301 KLQLFKMFPI ILAILVSWLL CFIFTVTDVF PPDSTKYGFY ARTDARQGVL LVAPWFKVPY 360
  361 PFQWGLPTVS AAGVIGMLSA VVASIIESIG DYYACARLSC APPPPIHAIN RGIFVEGLSC 420
  421 VLDGIFGTGN GSTSSSPNIG VLGITKVGSR RVIQCGAALM LALGMIGKFS ALFASLPDPV 480
  481 LGALFCTLFG MITAVGLSNL QFIDLNSSRN LFVLGFSIFF GLVLPSYLRQ NPLVTGITGI 540
  541 DQVLNVLLTT AMFVGGCVAF ILDNTIPGTP EERGIRKWKK GVGKGNKSLD GMESYNLPFG 600
  601 MNIIKKYRCF SYLPISPTFV GYTWKGLRKS DNSRSSDEDS QATG