YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114680827
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELRQRVAH EPDAPPEDKE SESEAKVDGE TASDSESRAE SAPLPVSADD TPEVLNRALS  60
   61 NLSSRWKNWW VRGILTLAMI AFFFIIIYLG PMVLMIIVMC VQIKCFHEII TIGYNVYHSY 120
  121 DLPWFRTLSW YFLLCVNYFF YGETVTDYFF TLVQREEPLR ILSKYHRFIS FTLYLIGFCM 180
  181 FVLSLVKKHY RLQFYMFGWT HVTLLIVVTQ SHLVIHNLFE GMIWFIVPIS CVICNDIMAY 240
  241 MFGFFFGRTP LIKLSPKKTW EGFIGGFFAT VVFGLLLSYV MSGYRCFVCP VEYNNDTNSF 300
  301 TVDCEPSDLF RLQEYNIPGV IQSVIGWKTV RMYPFQIHSI ALSTFASLIG PFGGFFASGF 360
  361 KRAFKIKDFA NTIPGHGGIM DRFDCQYLMA TFVNVYIASF IRGPNPSKLI QQFLTLRPDQ 420
  421 QLHIFNTLRS HLIDKGMLTS TTEDK

Type	Start	End	Confidence
Cytoplasmic	1	68	0.92
Transmembrane Helix	69	89	0.90
Non-Cytoplasmic	90	93	0.64
Transmembrane Helix	94	116	0.63
Cytoplasmic	117	123	0.60
Transmembrane Helix	124	142	0.76
Non-Cytoplasmic	143	167	0.74
Transmembrane Helix	168	186	0.95
Cytoplasmic	187	194	0.75
Transmembrane Helix	195	215	0.83
Non-Cytoplasmic	216	222	0.81
Transmembrane Helix	223	246	0.92
Cytoplasmic	247	261	0.85
Transmembrane Helix	262	281	0.93
Non-Cytoplasmic	282	336	0.93
Transmembrane Helix	337	357	0.93
Cytoplasmic	358	445	0.82