YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4826467
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGMAMWNRPC QRLPQQPLVA EPTAEGEPHL PTGRELTEAN RFAYAALCGI SLSQLFPEPE  60
   61 HSSFCTEFMA GLVQWLELSE AVLPTMTAFA SGLGGEGADV FVQILLKDPI LKDDPTVITQ 120
  121 DLLSFSLKDG HYDARARVLV CHMTSLLQVP LEELDVLEEM FLESLKEIKE EESEMAEASR 180
  181 KKKENRRKWK RYLLIGLATV GGGTVIGVTG GLAAPLVAAG AATIIGSAGA AALGSAAGIA 240
  241 IMTSLFGAAG AGLTGYKMKK RVGAIEEFTF LPLTEGRQLH ITIAVTGWLA SGKYRTFSAP 300
  301 WAALAHSREQ YCLAWEAKYL MELGNALETI LSGLANMVAQ EALKYTVLSG IVAALTWPAS 360
  361 LLSVANVIDN PWGVCLHRSA EVGKHLAHIL LSRQQGRRPV TLIGFSLGAR VIYFCLQEMA 420
  421 QEK

Type	Start	End	Confidence
Cytoplasmic	1	191	0.98
Transmembrane Helix	192	214	0.94
Non-Cytoplasmic	215	229	0.61
Transmembrane Helix	230	253	0.89
Cytoplasmic	254	344	0.88
Transmembrane Helix	345	365	0.59
Non-Cytoplasmic	366	398	0.52
Transmembrane Helix	399	416	0.50
Cytoplasmic	417	423	0.60