YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114677195
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASALSLGNK CDPFLRCVLC RGGGALQGPR GRGPDDFESQ LSPPGPARRL VRGKRACGNP  60
   61 PDAFGLSRAS VHQPLPRVSI GCSSGPGRAK RERVGGAAWR QRKMAASAAV FSRLRSGLRL 120
  121 GSRGLCTRLA TPPRRAPDQA AEIGSRGSTK TQGPQQQPGS EGPSYAKKVA LWLAGLLGAG 180
  181 GTVSVVYIFG NNPVDENGAK IPDEFDNDPI LVQQLRRTYK YFKDYRQMII EPTSPCLLPD 240
  241 PLQEPYYQPP YTLVLELTGV LLHPEWSLAT GWRFKKRPGI ETLFQQLAPL YEIVIFTSET 300
  301 GMTAFPLIDS VDPHGFISYR LFRDATRYMD GHHVKDISCL NRDPARVVVV DCKKEAFRLQ 360
  361 PYNGVALRPW DGNSDDRVLL DLSAFLKTIA LNGVEDVRTV LEHYALEDDP LAAFKQRQSR 420
  421 LEQEEQQRLA ELSKSNKQNL FLGSLTSRLW PRSKQP

Type	Start	End	Confidence
Cytoplasmic	1	168	0.52
Transmembrane Helix	169	189	0.51
Non-Cytoplasmic	190	456	0.89