YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114675243
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEERKTAEL QKNRIQDSVV FEDVAVDFTQ EEWALLDLAQ RNLYRDVMLE NFQNLASLGY  60
   61 PLHTPHLISQ WEQEEDLQTV KRELIQGIFM GEHREGFETQ LKTNESVASQ DICGEKISNE 120
  121 QKIVRFKRND SWFSSLHENQ ESCGIDYQNK SHERHLRNHM VENIYECYEE NQDGETFSQV 180
  181 PNLDSLKRNT EVKSCECHEK GKAFVDHSSL KTFIGSHTGS KPYQTHSGEK PYECKECGKA 240
  241 FISSSHLTVH IRTHTGEKPY ECKKCGKAFI YPSALRIHMR THTGEKPYEC KECGKAFRHS 300
  301 SYLTVHARMH TGEKPFECLE CGKAFSCPSS FRRHVRSHTG EKPYECKECG KAFVCPAYFR 360
  361 SNMDLGNQTR VSEFLLLGFS QDLEDQQLLF ALFLSMYLVT VLGNLLIILA ISSDSHLHTP 420
  421 INFFLSNLSL ADIGFTSTAV PKMLVNIQVQ SNAISYAGCI AQMYFFMVFG GMDTFLLTVM 480
  481 AYDRYVAICH PLYYRVIMNP RLCGLLVLVS WFLSLSYSLI QSLLMLQVSF CTSWVIQHFY 540
  541 CELAQVLTLT CSDTHVNYIL LYVVTGLLDF VPFSGILYSY TQIVSYILRI SSTDGKHKAF 600
  601 STCGSHLFVV SLFYGTGLGV YLSSNASSSS WWGMVASVMY TVVTPMLNPF IYCLRNRDIK 660
  661 RTLETLLGRM LYAQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	388	0.96
Transmembrane Helix	389	411	0.93
Cytoplasmic	412	420	0.81
Transmembrane Helix	421	440	0.86
Non-Cytoplasmic	441	459	0.75
Transmembrane Helix	460	482	0.85
Cytoplasmic	483	501	0.83
Transmembrane Helix	502	520	0.92
Non-Cytoplasmic	521	558	0.88
Transmembrane Helix	559	581	0.84
Cytoplasmic	582	599	0.82
Transmembrane Helix	600	622	0.88
Non-Cytoplasmic	623	630	0.84
Transmembrane Helix	631	654	0.89
Cytoplasmic	655	674	0.98