YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114669809
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLSRHGPQ NRPSDPGAAR GGWRDARVGK LLGLTLVAMT GAWLGLYRGG IAWESDLQFN  60
   61 AHPLCMVIGL IFLQGNALLV YRVFRNEAKR TTKVLHGLLH IFALVIALVG LVAVFDYHRK 120
  121 KGYADLYSLH SWCGILVFVL YFVQWLVGFS FFLFPGASFS LRSRYRPQHI FFGATIFLLS 180
  181 VGTALLGLKE ALLFNLGGKY SAFEPEGVLA NVLGLLLVCF GGAVLYILTR ADWKRPSQAE 240
  241 EQALSMDFKT LTEGDSPGSQ

Type	Start	End	Confidence
Cytoplasmic	1	27	0.98
Transmembrane Helix	28	47	0.92
Non-Cytoplasmic	48	58	0.79
Transmembrane Helix	59	84	0.84
Cytoplasmic	85	93	0.95
Transmembrane Helix	94	115	0.91
Non-Cytoplasmic	116	131	0.84
Transmembrane Helix	132	154	0.87
Cytoplasmic	155	168	0.80
Transmembrane Helix	169	188	0.95
Non-Cytoplasmic	189	207	0.88
Transmembrane Helix	208	229	0.94
Cytoplasmic	230	260	0.99