YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114669577
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYCWCQGFQS MLKIRYAVCL PRVCPVGQLK KAITSSHGVR FFQSLLKWPS YPGHSLQNKL  60
   61 QRDSLPPAPA VVLSTGQVVR GIRAGEADCP RAEKMQVSWV PMRAAVNAAR LPEREWSGTG 120
  121 GAERGLRWLG TWKRCSLPFR HPALQPPRRP KSSNPFTRAQ EEKRRRQNKT TLTYVAAVAV 180
  181 GMLGASYAAV PLYRLYCQTT GLGGSAVAGH ASDKIENMVP VKDRIIKISF NADVHASLQW 240
  241 NFRPQQTEIY VVPGETALAF YRAKNPTDKP VIGISTYNIV PFEAGQYFNK IQCFCFEEQR 300
  301 LNPQEEVDMP VFFYIDPEFA EDPRMIKVDL ITLSYTFFEA KEGHKLPVPG YN

Type	Start	End	Confidence
Cytoplasmic	1	170	0.81
Transmembrane Helix	171	190	0.81
Non-Cytoplasmic	191	352	0.93