YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114668384
Protein type:	Globular with Signal Peptide
Type Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRAQGLKQS KPPLVSRAIP PPAHIPCVSA FNLGRPTSLL LAGSSAALFN RRSAPGRFPQ  60
   61 CLAAVMAAPS WRGARLVQSV LRVWQVGPHV ARERVIPFSS LLGFQRRCVS CVAGSAFSGP 120
  121 RLASASRSNG QGSALDHFLG FSQPDSSVTP CVPAVSMNRD EQNVLLVHHP DMPENSRVLR 180
  181 VVLLGAPNAG KSTLSNQLLG RKVFPVSRKV HTTRCQALGV ITEKETQVIL LDTPGIISPG 240
  241 KQKRHHLELS LLEDPWKSME SADLVVVLVD VSDKWTRNQL SPQLLRCLTK FSQIPSVLVM 300
  301 NKVDCLKQKS VLLELTAALT EGVVNGKKLK MRQAFHSHPG THCPSPAVKD PNTQSVGNPQ 360
  361 RIGWPHFKEI FMLSALSQED VKTLKQYLLT QAQPGPWEYH SAVLTSQTPE EICANIIREK 420
  421 LLEHLPQEVP YNVQQKTAVW EEGPGGELVI QQKLLVPKES YVKLLIGPKG HLISQIAQEA 480
  481 GRDLMDIFLC DVDIRLSVKL LK

Type	Start	End	Confidence
Signal Peptide	1	30	0.48
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	502	0.97