YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114668714
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.97
Transmembrane Helix	37	59	0.90
Non-Cytoplasmic	60	73	0.78
Transmembrane Helix	74	96	0.89
Cytoplasmic	97	113	0.87
Transmembrane Helix	114	135	0.89
Non-Cytoplasmic	136	152	0.86
Transmembrane Helix	153	173	0.90
Cytoplasmic	174	182	0.78
Transmembrane Helix	183	206	0.87
Non-Cytoplasmic	207	213	0.81
Transmembrane Helix	214	236	0.92
Cytoplasmic	237	256	0.94
Transmembrane Helix	257	277	0.88
Non-Cytoplasmic	278	296	0.85
Transmembrane Helix	297	320	0.86
Cytoplasmic	321	336	0.88
Transmembrane Helix	337	357	0.93
Non-Cytoplasmic	358	377	0.90
Transmembrane Helix	378	399	0.86
Cytoplasmic	400	409	0.77
Transmembrane Helix	410	431	0.89
Non-Cytoplasmic	432	437	0.71
Transmembrane Helix	438	458	0.94
Cytoplasmic	459	546	0.96
Transmembrane Helix	547	567	0.93
Non-Cytoplasmic	568	570	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAPEEPAPV RGGPEATLEV HGSRCLRLSA FREELRALLV LAGPAFLVQL MVFLISFISS  60
   61 VFCGHLGKLE LDAVTLAIAV INVTGVSVGF GLSSACDTLI SQTYGSQNLK HVGVILQRSA 120
  121 LVLLLCCFPC WALFLNTQHI LLLFRQDPDV SRLTQTYVTI FIPALPATFL YMLQVKYLLN 180
  181 QGIVLPQIVT GVAANLVNAL ANYLFLHQLH LGVIGSALAN LISQYTLALL LFLYILGKKL 240
  241 HQATWGGWSL ECLQDWASFL RLAVPSMLML CMEWWAYEVG SFLSGILGMV ELGAQSIVYE 300
  301 LAIIVYMVPA GFSVAASVRV GNALGAGDME QARKSSTVSL LITVLFAVAF SVLLLSCKDH 360
  361 VGYIFTTDRD IINLVAQVVP IYAVSHLFEA LACTSGGVLR GSGNQKVGAI VNTIGYYVVG 420
  421 LPIGIVLMFA TTLGVMGLWS GIIICTVFQA VCFLGFIIQL NWKKACQQAQ VHANLKVNNV 480
  481 PRSGNSAVPQ DPLHPGCPEN LEGILTNDVG KTGEPQSDQQ MRQEEPLPEH PQDGAKLSRK 540
  541 QLVLRRGLLL LGVFLILLVG ILVRFYVRIQ