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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114665748
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.51
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVALALRLS LPLLSPAGHD PGTPGPVLSY PVAELAEPFR SLCDFCQSHS KMLNRPLRDP  60
   61 LSKRASSIFR EPPGGVCVDQ GRSETPRRHP TQAETAHPNP HGTVSWDSGC GAAGFAGAVQ 120
  121 CGEEPSRLGE GALAREETGQ GADSRSVLWA AVLASQPRLP MTSSREGRAG GGWAAGSGSR 180
  181 RPAGPGRGVE WSEDRLGDWG RCLDGRGPSI FPGGGRSENT LGGGAARLSA AALGIGRRSA 240
  241 LRAESTFINF VWEALRRRPG PPIARSCKRA PGAFPGARRC VRAPFCCSRG GGGPRGRRGG 300
  301 GCGRLARGRR PPSKPPAKCS GWQKQAAGSA EQAARPGAEQ ARGAAGQHHG CLRAPVPSAR 360
  361 GWSSPCPCGA GPPGTSGSPA CPRLDALGLA AAGAQGFESG PREGVRLGRP RSGGPVANML 420
  421 RKGCCVELLL LLVAAELPLG GGCPRDCVCY PAPMTVSCQA HNFAAIPEGI PVDSERVFLQ 480
  481 NNRISLLQPG RFSPAMVTLW MYSNNITYIH PGTFEGFVHL EELDLGDNRQ LRTLAPETFQ 540
  541 GLVKLHALYL YKCGLSALPA GVFGGLHSLQ YLYLQDNHIE YLQDGIFVDL VNLSHLFLHG 600
  601 NKLWSLGPGT FRGLVNLDRL LLHENQLQWV HHKAFHDLRR LTTLFLFNNS LSELQGECLA 660
  661 PLGALEFLRL NGNPWDCGCR ARSLWEWLQR FRGSSSAVPC VSPGLRHGQD LKLLRAEDFR 720
  721 NCTGPASPHQ IKSHTLTTTD RAARKEHHSP HGPTRSKGHP HGPRPGHRKP GKNCTNPRNR 780
  781 NQISKAGAGK QAPELPDYAP DYQHKFSFDI MPTARPKRKG KCARRTPIRA PSGVQQASSA 840
  841 SSLGASLLAW TLGLAVTLR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle