YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SERINC3
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.80
Transmembrane Helix	7	29	0.79
Cytoplasmic	30	36	0.78
Transmembrane Helix	37	56	0.84
Non-Cytoplasmic	57	100	0.93
Transmembrane Helix	101	119	0.93
Cytoplasmic	120	132	0.87
Transmembrane Helix	133	152	0.96
Non-Cytoplasmic	153	159	0.75
Transmembrane Helix	160	182	0.92
Cytoplasmic	183	200	0.92
Transmembrane Helix	201	225	0.91
Non-Cytoplasmic	226	238	0.84
Transmembrane Helix	239	258	0.93
Cytoplasmic	259	267	0.86
Transmembrane Helix	268	287	0.58
Non-Cytoplasmic	288	336	0.53
Transmembrane Helix	337	353	0.77
Cytoplasmic	354	404	0.58
Transmembrane Helix	405	427	0.87
Non-Cytoplasmic	428	442	0.57
Transmembrane Helix	443	468	0.81
Cytoplasmic	469	473	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVLGVFSL ASWVPCLCSG ASCLLCSCCP NSKNSTVTRL IYAFILLLST VVSYIMQRKE  60
   61 METYLKKIPG FCEGGFKIHE ADINADKDCD VLVGYKAVYR ISFAMAIFFF VFSLLMFKVK 120
  121 TSKDLRAAVH NGFWFFKIAA LIGIMVGSFY IPGGYFSSVW FVVGMIGAAL FILIQLVLLV 180
  181 DFAHSWNESW VNRMEEGNPR LWYAALLSFT SAFYILSIIC VGLLYTYYTK PDGCTENKFF 240
  241 ISINLILCVV ASIISIHPKI QEHQPRSGLL QSSLITLYTM YLTWSAMSNE PDRSCNPNLM 300
  301 SFITRITAPT LAPGNSTAVV PTPTPPSKSG SLLDSDNFIG LFVFVLCLLY SSIRTSTNSQ 360
  361 VDKLTLSGSD SVILGDTTTS GASDEEDGQP RRAVDNEKEG VQYSYSLFHL MLCLASLYIM 420
  421 MTLTSWYSPD AKFQSMTSKW PAVWVKISSS WVCLLLYVWT LVAPLVLTSR DFS