YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114663888
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQESDLFLC VVIGPSKAFT MVYKAPCCVA PASLSLSRVY ERLHPPHRGR GDVTAGTAPP  60
   61 PPHLGPNRST SPRARDPAPI LRLTTCDNCE KATPESWDLA SSRPHTLRGP IQCRPGLSYR 120
  121 PTSPAVSLLK SCSRSPRLQS HQLQFPPPPS SAHRSTSIRL CLGHRGLHGG ATEAKVAEPP 180
  181 TPLFLEVCNL APVVDLHIGS VGTWLVCSAC GLDAAVPQWT HCASPHDGRK WAPPGQAAHA 240
  241 PWGPRAAGAG SREHGGAVEG VTGFRRLASG SAVCSLAAGL RVGRLRRRLP LQFSRCGHES 300
  301 GCTAVIHPHL LKMHPDLSPH LHTEECNVLI NLLKECHKNH NILKFFGYCN DVDRELRKCL 360
  361 KNEGPS

Type	Start	End	Confidence
Signal Peptide	1	18	0.59
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	366	0.95