YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114663230
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	163	0.95
Transmembrane Helix	164	185	0.90
Non-Cytoplasmic	186	198	0.72
Transmembrane Helix	199	218	0.93
Cytoplasmic	219	230	0.73
Transmembrane Helix	231	250	0.82
Non-Cytoplasmic	251	282	0.78
Transmembrane Helix	283	304	0.94
Cytoplasmic	305	313	0.86
Transmembrane Helix	314	334	0.93
Non-Cytoplasmic	335	354	0.81
Transmembrane Helix	355	374	0.85
Cytoplasmic	375	385	0.89
Transmembrane Helix	386	409	0.86
Non-Cytoplasmic	410	438	0.91
Transmembrane Helix	439	463	0.87
Cytoplasmic	464	482	0.92
Transmembrane Helix	483	502	0.95
Non-Cytoplasmic	503	511	0.77
Transmembrane Helix	512	530	0.95
Cytoplasmic	531	542	0.85
Transmembrane Helix	543	564	0.93
Non-Cytoplasmic	565	570	0.79
Transmembrane Helix	571	590	0.96
Cytoplasmic	591	634	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWNQRTCTG GHKAGGKDSR ALEKGGERGR AQFTGCSSPD EAAGGCLAST LTFWAGGPRT  60
   61 GQAVAATGAR KRRRQLAPHG TVSRRGARSA AAAAARPSIL AAPGHWEATV NTGVQEPFVM 120
  121 EAREPGRPTP TYHLVPNTSQ SQVEEDVSSP PQRSSETMQL KKEISLLNGV SLVVGNMIGS 180
  181 GIFVSPKGVL VHTASYGMSL IVWAIGGLFS VVGALCYAEL GTTITKSGAS YAYILEAFGG 240
  241 FIAFIRLWVS LLVVEPTGQA IIAITFANYI IQPSFPSCDP PYLACRLLAA ACICLLTFVN 300
  301 CAYVKWGTRV QDTFTYAKVV ALIAIIVMGL VKLCQGHSEH FQDAFEGSSW DMGNLSLALY 360
  361 SALFSYSGWD TLNFVTEEIK NPERNLPLAI GISMPIVTLI YILTNVAYYT VLNISDVLSS 420
  421 DAVAVTFADQ TFGMFSWTIP IAVALSCFGG LNASIFASSR LFFVGSREGH LPDLLSMIHI 480
  481 ERFTPIPALL FNCTMALIYL IVEDVFQLIN YFSFSYWFFV GLSVVGQLYL RWKEPKRPRP 540
  541 LKLSVFFPIV FCICSVFLVI VPLFTDTINS LIGIGIALSG VPFYFMGVYL PESRRPLFIR 600
  601 NVLAAITRGT QQLCFCVLTE LDVAEEKKDE RKTD