YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114662965
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKAAKGAK PEPAPAPPPP GAKPEEDKKD DKEPSDKPQK AVQPKHEVGT RRGCRRYRWE  60
   61 LKDSNKEFWL LGHAEIKILS LGCLIAAMIL LSSLTVHPIL RLIITMEISI FSFFILLYSF 120
  121 AIHRYIPFIL WPLQDLFNDL IACAFLVGAV VFAVRSWRSM NLHYLFAVIL IGAAGVFAFI 180
  181 DVCLQRNHFR GKKAKKHMLV PPPGKEKGPQ QGKGPEPAKP PEPGKPPGPA KGKK

Type	Start	End	Confidence
Cytoplasmic	1	75	0.95
Transmembrane Helix	76	96	0.88
Non-Cytoplasmic	97	102	0.61
Transmembrane Helix	103	122	0.90
Cytoplasmic	123	135	0.74
Transmembrane Helix	136	155	0.94
Non-Cytoplasmic	156	162	0.77
Transmembrane Helix	163	184	0.94
Cytoplasmic	185	234	0.96