YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114655991
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	85	0.93
Transmembrane Helix	86	103	0.87
Non-Cytoplasmic	104	109	0.68
Transmembrane Helix	110	128	0.92
Cytoplasmic	129	307	0.98
Transmembrane Helix	308	332	0.88
Non-Cytoplasmic	333	356	0.89
Transmembrane Helix	357	379	0.82
Cytoplasmic	380	1091	0.86
Transmembrane Helix	1092	1117	0.73
Non-Cytoplasmic	1118	1121	0.46
Transmembrane Helix	1122	1142	0.61
Cytoplasmic	1143	1171	0.91
Transmembrane Helix	1172	1194	0.88
Non-Cytoplasmic	1195	1200	0.90
Transmembrane Helix	1201	1222	0.92
Cytoplasmic	1223	1228	0.91
Transmembrane Helix	1229	1251	0.91
Non-Cytoplasmic	1252	1272	0.82
Transmembrane Helix	1273	1293	0.89
Cytoplasmic	1294	1426	0.97
Transmembrane Helix	1427	1448	0.65
Non-Cytoplasmic	1449	1500	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEREPAGTEE PGPPGRRRRR EGRTRTVRSN LLPPPGAEDP AAGAAKGERR RRRGCAQHLA  60
   61 DNRLKTTKYT LLSFLPKNLF EQFHRPANVY FVFIALLNFV PAVNAFQPGL ALAPVLFILA 120
  121 ITAFRDLWED YSRHRSDHKI NHLGCLVFSR EEKKYVNRSW KEIHVGDFVR LRCNEIFPAD 180
  181 ILLLSSSDPD GLCHIETANL DGETNLKRRQ VVRGFSELVS EFNPLTFTSV IECEKPNNDL 240
  241 SRFRGCIIHD NGKKAGLYKE NLLLRGCTLR NTDAVVGIVI YAGHETKALL NNSGPRYKRS 300
  301 KLERQMNCDV LWCVLLLVCM SLFSAVGHGL WIWRYQEKKS LFYVPKSDGS SLSPVTAAVY 360
  361 SFLTMIIVLQ VLIPISLYVS IEIVKACQVY FINQDMQLYD EETDSQLQCR ALNITEDLGQ 420
  421 IQYIFSDKTG TLTENKMVFR RCTVSGVEYS HDANAQRLAR YQEADSEEEE VVPRGGSVSQ 480
  481 RGSIGSHQSV RVVHRTQSTK SHRRTGSRAE AKRASMLSKH TAFSSPMEKD ITPDPKLLEK 540
  541 VSECDKSLAV ARHQEHLLAH LSPELSDVFD FFIALTICNT VVVTSPDQPR TKVRVRFELK 600
  601 SPVKTIEDFL RRFTPSCLTS GCSSIGSLAA NKSSHKLGSS FPSTPSSDSM LLRLEERLGQ 660
  661 PTSAIASNGY SSQADNWASE LAQEQESERE LRYEAESPDE AALVYAARAY NCVLVERLHD 720
  721 QVSVELPHLG RLTFELLHTL GFDSVRKRMS VVIRHPLTDE INVYTKGADS VVMDLLQPCS 780
  781 SEGAQVGRHQ KKIRSKTQNY LNVYAAEGLR TLCIAKRVLS KEEYACWLQS HLEAESSLEN 840
  841 SKELLFQSAI RLETNLHLLG ATGIEDRLQD GVPETISKLR QAGLQIWVLT GDKQETAVNI 900
  901 AYACKLLDHD EEVITLNATS QEACAALLDQ CLRYVQSRGL QRAPEKTKGK VSMRFSSLCP 960
  961 PSTSTASGRR PSLVIDGRSL AYALEENLED KFLFLAKQCR SVLCCRSTPL QKSMVVKLVR1020
 1021 SKLKAMTLAI GDGANDVSMI QVADVGVGIS GQEGMQAVMA SDFAVPKFRY LERLLILHGH1080
 1081 WCYSRLANMV LYFFYKNTMF VGLLFWFQFF CGFSASAMID QWYLIFFNLL FSSLPPLVTG1140
 1141 VLDRDVPANV LLTNPQVYKS GQNMEEYRPR TFWFNMADAA FQSLVCFSIP YLAYYDSSVD1200
 1201 LFTWGTPIVT IALLTFLLHL GIETKTWTWL NWITCGFSVL LFFTVALIYN ASCATCYPPS1260
 1261 NPYWTMQALL GDPVFYLTCL MTPVAALLPR LFFRSLQGSV FPTQLQLARQ LTRKSPRRCS1320
 1321 APKETFAQGR LPKDSGTEHS SGRTVKTSVP LSQPSWHTQQ PVCSLEASRE PSTVDMSMPL1380
 1381 REHTLLEGLS APAPMSSAPG EAVLRSPGGC PEESKVRAAS TGRVTPLSSL FSLPTFSLLN1440
 1441 WISSWSLVSR LGSVLQFSRT ERLADGQAGR GLPVQPHSGR SGLQGPDHRL LIGASSRRSQ1500
 1501