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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114654253
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.72
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVRIGLTLL LCAVLLSLAS ASSDEEGSQD ESLDSKTTLT SDESVKDHTT AGRVVAGQIF  60
   61 LDSEESELES SIQEEEDSLK SQEGESVTED ISFLESPNPE NKDYEEPKKV RKPDKEYDEC 120
  121 TSDGREDGRL WCATTYDYKA DEKWGFCETE EEAAKRRQMQ EAEMMYQTGM KILNGSNKKS 180
  181 QKREAYRYLQ KAASMNHTKA LERVSYALLF GDYLPQNIQA AREMFEKLTE EGSPKGQTAL 240
  241 GFLYASGLGV NSSQAKALVY YTFGALGGNL IAHMVLGYRY WAGIGVLQSC ESALTHYRLV 300
  301 ANHVASDISL TGGSVVQRIR LPDEVENPGM NSGMLEEDLI QYYQFLAEKG DVQAQVGLGQ 360
  361 LHLHGGRGVE QNHQRAFDYF NLAANAGNSH AMAFLGKMYS EGSDIVPQSN ETALHYFKKA 420
  421 ADMGNPVGQS GLGMAYLYGR GVQVNYDLAL KYFQKAAEQG WVDGQLQLGS MYYNGIGVKR 480
  481 DYKQALKYFN LASQGGHILA FYNLAQMHAS GTGVMRSCHT AVELFKNVCE RGRWSERLMT 540
  541 AYNSYKDGDY NAAVIQYLLL AEQGYEVAQS NAAFILDQRE ATIVGENETY PRALLHWNRA 600
  601 ASQGYTVARI KLGDYHFYGF GTDVDYETAF IHYRLASEQQ HSAQAMFNLG YMHEKGLGIK 660
  661 QDIHLAKRFY DMAAEASPDA QVPVFLALCK LGVVYFLQYI RETNIRDMFT QLDMDQLLGP 720
  721 EWDLYLMTII ALLLGTVIAY RQRQHQDMPA PRPPGPRPAP PQQEGPPEQQ PPQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle