YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114653700
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.76
Transmembrane Helix	11	30	0.84
Non-Cytoplasmic	31	76	0.88
Transmembrane Helix	77	95	0.93
Cytoplasmic	96	135	0.87
Transmembrane Helix	136	161	0.74
Non-Cytoplasmic	162	168	0.80
Transmembrane Helix	169	189	0.95
Cytoplasmic	190	199	0.89
Transmembrane Helix	200	222	0.89
Non-Cytoplasmic	223	230	0.78
Transmembrane Helix	231	251	0.89
Cytoplasmic	252	755	0.98
Transmembrane Helix	756	777	0.88
Non-Cytoplasmic	778	791	0.54
Transmembrane Helix	792	810	0.67
Cytoplasmic	811	832	0.77
Transmembrane Helix	833	853	0.91
Non-Cytoplasmic	854	861	0.83
Transmembrane Helix	862	885	0.92
Cytoplasmic	886	902	0.91
Transmembrane Helix	903	925	0.88
Non-Cytoplasmic	926	931	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWLRLQPLT SAFLHFGLVT FVLFLNGLRA EAGGSGDVPS TGQNNESCSG SSDCKEGVIL  60
   61 PIWYPENPSL GDKIARVIVY FVALIYMFLG VSIIADRFMA SIEVITSQER EVTIKKPNGE 120
  121 TSTTTIRVWN ETVSNLTLMA LGSSAPEILL SLIEVCGHGF IAGDLGPSTI VGSAAFNMFI 180
  181 IIGICVYVIP DGETRKIKHL RVFFITAAWS IFAYIWLYMI LAVFSPGVVQ VWEGLLTLFF 240
  241 FPVCVLLAWV ADKRLLFYKY MHKKYRTDKH RGIIIETEGD HPKGIEMDGK MMNSHFLDGN 300
  301 LVPLEGKEVD ESRREMIRIL KDLKQKHPEK DLDQLVEMAN YYALSHQQKS RAFYRIQATR 360
  361 MMTGAGNILK KHAAEQAKKA SSMSEVHTDE PEDFISKVFF DPCSYQCLEN CGAVLLTVVR 420
  421 KGGDMSKTMY VDYKTEDGSA NAGADYEFTE GTVVLKPGET QKEFSVGIID DDIFEEDEHF 480
  481 FVRLSNVRIE EEQPEEGMPP AIFNSLPLPR AVLASPCVAT VTILDDDHAG IFTFECDTIH 540
  541 VSESIGVMEV KVLRTSGARG TVIVPFRTVE GTAKGGGEDF EDTYGELEFK NDETVKTIRV 600
  601 KIVDEEEYER QENFFIALGE PKWMERGISG AFSVTHTYFE NRKLTMEEEE AKRIAEMGKP 660
  661 VLGEHPKLEV IIEESYEFKT TVDKLIKKTN LALVVGTHSW RDQFMEAITV SAGEKWDEDE 720
  721 DESGEERLPS CFDYVMHFLT VFWKVLFACV PPTEYCHGWA CFAVSILIIG MLTAIIGDLA 780
  781 SHFGCTIGLK DSVTAVVFVA FGTSVPDTFA SKAAALQDVY ADASIGNVTG SNAVNVFLGI 840
  841 GLAWSVAAIY WALQGQEFHV SAGTLAFSVT LFTIFAFVCI SVLLYRRRPH LGGELGGPRG 900
  901 CKLATTWLFV SLWLLYILFA TLEAYCYIKG F