YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114653441
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNVKVRNEG TVSKMRSPEA QTNRIQISDG GMQKGTHPSN YLFAFNTEDF ALPPTADAAA  60
   61 VHFGPPLFDP VCTIVLSRQA QCNLSRNFAA VAGSRLASCA QQSWGKLPWA AARSPRRQAR 120
  121 PGSQGPFRAP AVRSDLRARA PAPGWGKGGV ESASVQEGFR RRSPEGGGSS VRWLLCVPAR 180
  181 RPASPCPALS LGWRGSLPAP PPREPRPRQQ PGFGIRAGDA EIRSTPPLLW GNIYSTYSST 240
  241 NTPSLPGSIY SPAAEPCGLL SRPRIQGGKR GLVAPQNTFL KNIVRRSSES SFLLGNAQIV 300
  301 DWPVVYSNDG FCKLSGYHRA DVMQKSSTCS FMYGELTDKK TIEKVRQTFD NYESNCFEVL 360
  361 LYKKNRTPVW FYMQIAPIRN EHEKVVLFLC TFKDITLFKQ PIEDDSTKGW TKFARLTRAL 420
  421 TNSRSVLQQL TPMNKTEVVH KHSRLAEVLQ LGSDILPQYK QEAPKTPPHI ILHYCAFKTT 480
  481 WDWVILILTF YTAIMVPYNV SFKTKQNNIA WLVLDSVVDV IFLVDIVLNF HTTFVGPGGE 540
  541 VISDPKLIRM NYLKTWFVID LLSCLPYDII NAFENVDEGI SSLFSSLKVV RLLRLGRVAR 600
  601 KLDHYLEYGA AVLVLLVCVF GLVAHWLACI WYSIGDYEVI DEVTNTIQID SWLYQLALSI 660
  661 GTPYRYNTSA GIWEGGPSKD SLYVSSLYFT MTSLTTIGFG NIAPTTDVEK MFSVAMMMVG 720
  721 SLLYATIFGN VTTIFQQMYA NTNRYHEMLN NVRDFLKLYQ VPKGLSERVM DYIVSTWSMS 780
  781 KGIDTEKVLS ICPKDMRADI CVHLNRKVFN EHPAFRLASD GCLRALAVEF QTIHCAPGDL 840
  841 IYHAGESVDA LCFVVSGSLE VIQDDEVVAI LGKGDVFGDI FWKETTLAHA CANVRALTYC 900
  901 DLHIIKREAL LKVLDFYTAF ANSFSRNLTL TCNLRKRIIF RKISDVKKEE EERLRQKNEV 960
  961 TLSIPVDHPV RKLFQKFKQQ KELRNQGSTQ GDPERNQLQV ESHSLQNGAS ITGTSVVTVS1020
 1021 QITPIQTSLA YVKTSESLKQ NNRDAMELKP NGGADQKCLK VNSPIRMKNG NGKGWLRLKN1080
 1081 NMGAHEEKKE DWNNVTKAES MGLLSEDPKS SDSENSVTKN PLRKTDSCDS GITKSDLRLD1140
 1141 KAGEARSPLE HSPIQADAKH PFYPIPEQAL QTTLQEVKHE LKEDIQLLSC RMTALEKQVA1200
 1201 EILKILSEKS VPQASSPKSQ MPLQVPPQIP CQDIFSVSRP ESPESDKDEI HF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle