YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114652122
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.98
Transmembrane Helix	40	61	0.92
Non-Cytoplasmic	62	71	0.83
Transmembrane Helix	72	94	0.89
Cytoplasmic	95	117	0.77
Transmembrane Helix	118	139	0.79
Non-Cytoplasmic	140	159	0.86
Transmembrane Helix	160	180	0.90
Cytoplasmic	181	189	0.84
Transmembrane Helix	190	210	0.90
Non-Cytoplasmic	211	228	0.87
Transmembrane Helix	229	250	0.91
Cytoplasmic	251	265	0.87
Transmembrane Helix	266	288	0.89
Non-Cytoplasmic	289	312	0.91
Transmembrane Helix	313	334	0.88
Cytoplasmic	335	359	0.81
Transmembrane Helix	360	379	0.92
Non-Cytoplasmic	380	387	0.68
Transmembrane Helix	388	407	0.93
Cytoplasmic	408	419	0.83
Transmembrane Helix	420	440	0.92
Non-Cytoplasmic	441	445	0.78
Transmembrane Helix	446	467	0.91
Cytoplasmic	468	533	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEGARHRNN TEKKHPGGGE SDASPEAGSG GGGVALKKEI GLVSACGIIV GNIIGSGIFV  60
   61 SPKGVLENAG SVGLALIVWI VTGFITVVGA LCYAELGVTI PKSGGDYSYV KDIFGGLAGF 120
  121 LRLWIAVLVI YPTNQAVIAL TFSNYVLQPL FPTCFPPESG LRLLAAICLL LLTWVNCSSV 180
  181 RWATRVQDIF TAGKLLALAL IIIMGIVQIC KGHLSHPKNA FENFQEPDIG LVALAFLQGS 240
  241 FAYGGWNFLN YVTEELVDPY KNLPRAIFIS IPLVTFVYVF ANVAYVTAMS PQELLASNAV 300
  301 AVTFGEKLLG VMAWIMPISV ALSTFGGVNG SLFTSSRLFF AGAREGHLPS VLAMIHVKRC 360
  361 TPIPALLFTC ISTLLMLVTS DMYTLINYVG FINYLFYGVT VAGQIVLRWK KPDIPRPIKI 420
  421 NLLFPIIYLL FWAFLLVFSL WSEPVVCGIG LAIMLTGVPV YFLGVYWQHK PKCFSDFIEL 480
  481 LTLVSQKMCV VVYPEVERGS GTEEANEDME EQQQPMYQPT PTKDKDVAGQ PQP