YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114650502
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	34	0.99
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	300	0.99
Transmembrane Helix	301	323	0.91
Cytoplasmic	324	364	0.95
Transmembrane Helix	365	388	0.91
Non-Cytoplasmic	389	396	0.79
Transmembrane Helix	397	419	0.91
Cytoplasmic	420	433	0.86
Transmembrane Helix	434	456	0.89
Non-Cytoplasmic	457	468	0.77
Transmembrane Helix	469	493	0.86
Cytoplasmic	494	520	0.95
Transmembrane Helix	521	542	0.90
Non-Cytoplasmic	543	555	0.76
Transmembrane Helix	556	579	0.91
Cytoplasmic	580	589	0.82
Transmembrane Helix	590	612	0.88
Non-Cytoplasmic	613	619	0.84
Transmembrane Helix	620	641	0.91
Cytoplasmic	642	646	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSARLPVLSP PRWPRLLLLS LLLLGAVPGP RRSGAFYLPG LAPVNFCDEE KKSDECKAEI  60
   61 ELFVNRLDSV ESVLPYEYTA FDFCQASEGK RPSENLGQVL FGERIEPSPY KFTFNKKETC 120
  121 KLVCTKTYHT EKAEDKQKLE FLKKSMLLNY QHHWIVDNMP VTWCYDVEDG QRFCNPGFPI 180
  181 GCYITDKGHA KDACVISSDF HERDTFYIFN HVDIKIYYHV VETGSMGARL VAAKLEPKSF 240
  241 KHTHIDKPDC SGPPMDISNK ASGEIKIAYT YSVSFEEDDK IRWASRWDYI LESMPHTHIQ 300
  301 WFSIMNSLVI VLFLSGMVAM IMLRTLHKDI ARYNQMDSTE DAQEEFGWKL VHGDIFRPPR 360
  361 KGMLLSVFLG SGTQILIMTF VTLFFACLGF LSPANRGALM TCAVVLWVLL GTPAGYVAAR 420
  421 FYKSFGGEKW KTNVLLTSFL CPGIVFADFF IMNLILWGEG SSAAIPFGTL VAILALWFCI 480
  481 SVPLTFIGAY FGFKKNAIEH PVRTNQIPRQ IPEQSFYTKP LPGIIMGGIL PFGCIFIQLF 540
  541 FILNSIWSHQ MYYMFGFLFL VFIILVITCS EATILLCYFH LCAEDYHWQW RSFLTSGFTA 600
  601 VYFLIYAVHY FFSKLQITGT ASTILYFGYT MIMVLIFFLF TGKIRI