YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114649577
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPREGGGAE IKARVRRPLQ LSAVLGSSGL FNNHGLQVQQ QQQRNLSLHE YMSMELLQEA  60
   61 GVSVPKGYVA KSPDEAYAIA KKLGSKDVVI KAQVLAGGRG KGTFESGLKG GVKIVFSPEE 120
  121 AKAVSSQMIG KKLFTKQTGE KGRICNQVLV CERKYPRREY YFAITMERSF QGPVLIGSSH 180
  181 GGVNIEDVAA ETPEAIIKEP IDIEEGIKKE QALQLAQKMG FPPNIVESAA ENMVKLYSLF 240
  241 LKYDATMIEI NPMVEDSDGA VLCMDAKINF DSNSAYRQKK IFDLQDWTQE DERDKDAAKA 300
  301 NLNYIGLDGN IGCLVNGAGL AMATMDIIKL HGGTPANFLD VGGGATVHQV TEAFKLITSD 360
  361 KKVLAILVNI FGGIMRCDVI AQGIVMAVKD LEIKIPVVVR LQGTRVDDAK ALIADSGLKI 420
  421 LACDDLDEAA RMVVKLSEIV TLAKQAHVDV KFQLPI

Type	Start	End	Confidence
Cytoplasmic	1	18	0.60
Transmembrane Helix	19	36	0.61
Non-Cytoplasmic	37	456	0.99