YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114649146
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWGGGGAWPG AGTGGVPAAP RTFAPTSPAS EAEELDQQPP GASESPSPGL PRSPERWDAG  60
   61 LGSRQRNMAP WTLWRCCQRV VGWVPVLFIT FVVVWSYYAY VVELCVLFTV SSPGKTVVYL 120
  121 VAFHLFFVMF VWSYWMTIFT SPASPSKEFY LSNSEKERYE KEFSQERQQE ILRRAARALP 180
  181 IYTTSASKTI RYCEKCQLIK PDRAHHCSAC DSCILKMDHH CPWVNNCVGF SNYKFFLLFL 240
  241 LYSLLYCLFV AATVLEYFIK FWTNELTDTR AKFHVLFLFF VSAMFFISVL SLFSYHCWLV 300
  301 GKNRTTIESF RAPTFSYGPD GNGFSLGCSK NWRQVFGDEK KYWLLPIFSS LGDGCSFPTR 360
  361 LVGMDPEQAS VTNQNEYARS SGSNQPFPIK PLSESKNRLL DSESQWLENG AEEGIIKSGV 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	79	0.96
Transmembrane Helix	80	99	0.94
Non-Cytoplasmic	100	116	0.87
Transmembrane Helix	117	138	0.90
Cytoplasmic	139	234	0.98
Transmembrane Helix	235	259	0.85
Non-Cytoplasmic	260	274	0.91
Transmembrane Helix	275	299	0.88
Cytoplasmic	300	420	0.95