YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114647497
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPPQPSAAH QGRGGRSGLL PKGPAMLCRL GWLVSYSLAV LLLGCLLFLR KEAKPAGDPM  60
   61 AHQPFWAPPT PRHSRCPPNH TVSSASLSLP SRHRLFLTYR HCRNFSILLE PSGCSKDTFL 120
  121 VLAIKSQPGH VERRAAIRST WGRVGGWARG RQLKLVFLLG VAGPAPPAQL LAYESREFDD 180
  181 ILQWDFTEDF FNLTLKELHL QRWVVAACPQ AHFMLKGDDD VFVHVPNVLE FLDGWDPAQD 240
  241 LLVGDVIRQA LPNRNTKVKY FIPPSMYKAT HYPPYAGGGG YVMSRATVRR LQAIMEEAEL 300
  301 FPIDDVFVGM CLRRLGLSPM HHAGFKTFGI RRPLDPLDPC LYRGLLLVHR LSPLEMWTMW 360
  361 ALVTDEGLKC AAGPIPQR

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.55
Transmembrane Helix	28	49	0.74
Cytoplasmic	50	152	0.51
Transmembrane Helix	153	168	0.37
Non-Cytoplasmic	169	378	0.85