YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114643018, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVKGGTKCI KYLLFGFNFI FWLAGIAVLA IGLWLRFDSQ TKSIFEQETN NNNSSFYTGV  60
   61 YILIGAGALM MLVGFLGCCG AVQESQCMLG LFFGFLLVIF AIEIAAAIWG YSHKDEVIKE 120
  121 VQEFYKDTYN KLKTKDEPQR ETLKAIHYAL NCCGLAGGVE QFISDICPKK DGLETFTVKS 180
  181 CPDAIKEVFD NKFHIIGAVG IGIAVVMIFG MIFSMILCCA IRRNREMV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.95
Transmembrane Helix	12	35	0.90
Non-Cytoplasmic	36	58	0.92
Transmembrane Helix	59	80	0.93
Cytoplasmic	81	88	0.80
Transmembrane Helix	89	109	0.94
Non-Cytoplasmic	110	197	0.97
Transmembrane Helix	198	220	0.92
Cytoplasmic	221	228	0.93