YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114642523
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	538	0.81
Transmembrane Helix	539	567	0.81
Cytoplasmic	568	602	0.68
Transmembrane Helix	603	626	0.92
Non-Cytoplasmic	627	634	0.67
Transmembrane Helix	635	654	0.90
Cytoplasmic	655	666	0.63
Transmembrane Helix	667	696	0.73
Non-Cytoplasmic	697	705	0.51
Transmembrane Helix	706	730	0.80
Cytoplasmic	731	736	0.46
Transmembrane Helix	737	755	0.56
Non-Cytoplasmic	756	775	0.87
Transmembrane Helix	776	798	0.92
Cytoplasmic	799	815	0.78
Transmembrane Helix	816	836	0.88
Non-Cytoplasmic	837	849	0.90
Transmembrane Helix	850	869	0.52
Cytoplasmic	870	888	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEARNRRIAH CPGHQKLTTL TAQGNFLADQ TARNVAKAPS QLLALQLPDP GPRDLPYFPE  60
   61 YSEQDLQWID KLPLKQIQNG WWTDTNDQTI LPEKLGQQVL EHIHRTTHLG ARRMIDLIRR 120
  121 SKLKIRHIAE TASSIVTSCK VCQLNNAYPQ SQAAAGTRLR GTRPASLTAN MQLGSLTLTL 180
  181 VALVAAGENI KPAPNPFVWR FWLYENQTHP GQPHKPGKLV ASADCPSSGC NSPILLNFTD 240
  241 FPVAKPVAPI ICFEYDQTEY NCKHYWWHQS AGCPYNYCNI HKYQWWGGEE QIDPRWPFHR 300
  301 RRDRDLSYAW IVRDPWNSRW TTPQHGAVYY SSASTWPSSH LYLWRGLVQV RPLVHGNIQR 360
  361 RENRLTQDLR PFPWLKLLQE GLELANLTGL HSLSGCFLCA TLGRPPLTAV PLPWGSSTSA 420
  421 QANNHQNLSY APIPNVPLYL NPSQEKFPYC FSGTNSSLCN ITATPPNITL RAPSGIFFWC 480
  481 NGTLSKNISS PSVTNLLCLP VTLVPRLTLL TAGEFLGYTG NWTSAVIHPD PRPRPARAIF 540
  541 LPLIAGISLT ASFMAAGLAG GALGHTLIES IKKHKSMADV NFTLVTEFIL LGLTDRAELK 600
  601 MVLFLLFLLI YTISLVGNLG MLFLIYVTPK LHTPMYYFLS CLSFVDACYS SVFAPKMLLN 660
  661 FFVERETILF SACIVQYFLF VSLLTTEGFL LATMAFDCYM AIVNPLLYTV AMTKIVCIVL 720
  721 VFGSCMGGLI NSLTHTIGLV KLSFCGPNVI SHFFCDLPPL LKLSCSETSM NELLLLIFSG 780
  781 IIATLTFLTV VISYIFIVAA ILRIRSAAGR RKAFSTCTSH LITVTLFYGS ISFSYIQPNS 840
  841 QYSLEQEKVV SVFYTLVVPM LNPLIYSLRN KEVKEAVKRA IEMKHFPC