YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114641039
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.98
Transmembrane Helix	77	98	0.91
Non-Cytoplasmic	99	140	0.93
Transmembrane Helix	141	163	0.87
Cytoplasmic	164	174	0.71
Transmembrane Helix	175	194	0.94
Non-Cytoplasmic	195	200	0.84
Transmembrane Helix	201	219	0.94
Cytoplasmic	220	229	0.67
Transmembrane Helix	230	247	0.76
Non-Cytoplasmic	248	268	0.65
Transmembrane Helix	269	288	0.88
Cytoplasmic	289	295	0.84
Transmembrane Helix	296	317	0.92
Non-Cytoplasmic	318	326	0.74
Transmembrane Helix	327	346	0.92
Cytoplasmic	347	356	0.93
Transmembrane Helix	357	380	0.88
Non-Cytoplasmic	381	420	0.93
Transmembrane Helix	421	440	0.90
Cytoplasmic	441	447	0.74
Transmembrane Helix	448	468	0.72
Non-Cytoplasmic	469	469	0.31
Transmembrane Helix	470	493	0.70
Cytoplasmic	494	515	0.54
Transmembrane Helix	516	538	0.81
Non-Cytoplasmic	539	765	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGSLHGRIG NCVSGRGNKF EELRDVPTLS GVALAHRGAQ GVEVPEDQAD RPVLPPIHVK  60
   61 MTKFGFLRLS YEKQDTLLKL LILSMAAVLS FSTRLFAVLR FESVIHEFDP YFNYRTTRFL 120
  121 AEEGFYKFHN WFDDRAWYPL GRIIGGTIYP GLMITSAAIY HVLHFFHITI DIRNVCVFLA 180
  181 PLFSSFTTIV TYHLTKELKD AGAGLLAAAM IAVVPGYISR SVAGSYDNEG IAIFCMLLTY 240
  241 YMWIKAVKTG SICWAAKCAL AYFYMVSSWG GYVFLINLIP LHVLVLMLTG RFSHRIYVAY 300
  301 CTVYCLGTIL SMQISFVGFQ PVLSSEHMAA FGVFGLCQIH AFVDYLRSKL NPQQFEVLFR 360
  361 SVISLVGFVL LTVGALLMLT GKISPWTGRF YSLLDPSYAK NNIPIIASVS EHQPTTWSSY 420
  421 YFDLQLLVFM FPVGLYYCFS NLSDARIFII MYGVTSMYFS AVMVRLMLVL APVMCILSGI 480
  481 GVSQVLSTYM KNLDISRPDK KSKKQQDSTY PIKNEVASGM ILVMAFFLIT YTFHSTWVTS 540
  541 EAYSSPSIVL SARGGDGSRI IFDDFREAYY WLRHNTPEDA KVMSWWDYGY QITAMANRTI 600
  601 LVDNNTWNNT HISRVGQAMA STEEKAYEIM RELDVSYVLV IFGGLTGYSS DDINKFLWMV 660
  661 RIGGSTDTGK HIKENDYYTP TGEFRVDREG SPVLLNCLMY KMCYYRFGQV YTEAKRPPGF 720
  721 DRVRNAEIGN KDFELDVLEE AYTTEHWLVR IYKVKDLDNR GLSRT