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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114639799
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDTVPTSLH ACKEIHFPSP LIFTFPVKEE KENVKGLQRW KYDVMDIIMG HCVGTRPPPC  60
   61 CLILLLFKLL ATVSQGLPGT GPLGFHFTHS IYNATVYENS AARTYVNSQS RMGITLIDLS 120
  121 WDIKYRIVSG DEEGFFKAEE VIIADFCFLR IRTKGGNSAI LNREIQDNYL LIVKGSVRGE 180
  181 DLEAWTKVNI QVLDMNDLRP LFSPTTYSVT IAESTPLRTS VAQVTATDAD IGSNGEFYYY 240
  241 FKNKVDLFSV HPTSGVISLS GRLNYDEKNR YDLEILAVDR GMKLYGNNGV SSTAKLYVHI 300
  301 ERINEHAPTI HVVTHVPFSL EKEPTYAVVT VDDLDDGANG EIESVSIVAG DPLDQFFLAK 360
  361 EGKWLNEYKI KERKQIDWES FPYGYNLTLQ AKDKGSPQKF SALKAVYIGN PTRDTVPIRF 420
  421 EKEVYDVSIS EFSPPGVVVA IVKLSPEPID VEYKLSPGED AVYFKINPRS GLIVTARPLN 480
  481 TVKKEVYKLE VTNKEGDLKA QVTISIEDAN DHTPEFQQPL YDAYVNESVP VGTSVLTVSA 540
  541 SDKDKGENGY ITYSIASLNL LPFVINQFTG VISTTEELDF ESSPEIYRFI VRASDWGSPY 600
  601 RHESEVNVTI RIGNVNDNSP LFEKVACQGV ISYDFPVGGH ITAVSAIDID ELELVKYKII 660
  661 SGNELGFFYL NPDSGVLQLK KSLTNSGIKN GNFALRITAT DGENLADPMS INISVLHGKV 720
  721 SSKSFSCRET RVAQKLAEKL LIKAKANGKL NLEDGFLDFY SINRQGPYFD KSFPSDVAVK 780
  781 EDLPVGANIL KIKAYDADSG FNGKVLFTIS DGNTDSCFNI DMETGQLKVL MPMDREHTDL 840
  841 YLLNITIYDL GNPQKSSWRL LTINVEDAND NSPVFIQDSY SVNILESSGI GTEIIQVEAR 900
  901 DKDLGSNGEV TYSVLTDTQQ FAINSSTGIV YVADQLDRES TANYSLKIEA RDKAESGQQL 960
  961 FSVVTLKVFL DDVNDCSPAF IPSSYSVKVL EDLPVGTVIA WLETHDPDLG LGGQVRYSLV1020
 1021 NDYNGRFEID KASGAIRLSK ELDYEKQQFY NLTVRAKDKG RPVSLSSVSF VEVEVVDVNE1080
 1081 NLHTPYFPDF AVVGSVKENS RIGTSVLQVT ARDEDSGRDG EIQYSIRDGS GLGRFSIDDE1140
 1141 SGVITAADIL DRETMGSYWL TVYATDRGVV PLYSTIEVYI EVEDVNDNAP LTSEPIYYPV1200
 1201 VMENSPKDVS VIQIQAEDPD SSSNEKLTYR ITSGNPQNFF AINIKTGLIT TTSRKLDREQ1260
 1261 QAEHFLEVTV TDGGPSPKQS TIWVVVQVLD ENDNKPQFPE KVYQIKLPER DRKKRGEPIY1320
 1321 RAFAFDRDEG PNAEISYSIV DGNDDGKFFI DPKTGMVSSR KQFTAGSYDI LTIKAVDNGR1380
 1381 PQKSSTARLH IEWIKKPPPS PIPLTFDEPF YNFTVMESDR VTEIVGVVSV QPANTPLWFD1440
 1441 IVGGNFDSAF DAEKGVGTIV IAKPLDAEQR SIYNMSVEVT DGTNVAVTQV FIKVLDNNDN1500
 1501 GPEFSQPNYD VTISEDVLPD TEILQIEATD RDEKHKLSYT VHSSIDSISM RKFRIDPSTG1560
 1561 VLYTAERLDH EAQDKHILNI MVRDQEFPYR RNLARVIVNV EDANDHSPYF TNPLYEASVF1620
 1621 ESAALGSAVL QVTALDKDKG ENAELIYTIE AGNTGNMFKI EPVLGIITIC KEPDMTMMGQ1680
 1681 FVLSIKVTDQ GSPPMSATAI VRISVTMSDN SHPKFIHKDY QAEVNENVDI GTSVILISAI1740
 1741 SQSTLIYEVK DGDINGIFTI NPYSGVITTR KALDYEHTSS YQLIIQATNM AGMASNATVN1800
 1801 IQIVDENDNA PVFLFSQYSG SLSEAAPINS IVRSLDNSPL VIRATDADSN RNALLVYQIV1860
 1861 ESTAKKFFTV DSSTGAIRTI ANLDHETIAH FHFHVHVRDS GSPQLTAESP VEVNIEVTDV1920
 1921 NDNPPVFTQA VFETVLLLPT YVGVEVLKVS ATDPDSEVPP ELTYSLMEGS LDHFLIDSNS1980
 1981 GVLTIKNNNL SKDHYMLIVK VSDGKFYSTS MVTIMVKEAM DSGLHFTQSF YSTSISENNT2040
 2041 NITKVAIVNA VGNRLNEPLK YSILNPGNKF KIKSTSGVIQ TTGVPFDREE QELYELVVEA2100
 2101 SRELDHLRVA RVVVRVNIED INDNSPVFVG LPYYAAVQVD AEPGTLIYQV TAIDKDKGPN2160
 2161 GEVTYVLQDD YGHFEINPNS GNVILKEAFN SDLSNIEYGV TILAKDGGKP SLSTSVELPI2220
 2221 TIVNKAMPVF DKPFYTASVN EDIRMNTPIL SINATSPEGQ GIIYIIIDGD PFKQFNIDFD2280
 2281 TGVLKVVSPL DYEVTSAYKL TIRASDALTG ARAEVTVDLL VNDVNDNPPI FDQPTYNTTL2340
 2341 SEASLIGTPV LQVVSIDADS ENNKMVHYQI VQDTYNSTDY FHIDSSSGLI LTARMLDHEL2400
 2401 VQHCTLKVRS IDSGFPSLSS EVLVHIYISD VNDNPPVFNQ LIYESYVSEL APRGHFVTCV2460
 2461 QASDADSSDF DRLEYSILSG NDRTSFLMDS KSGVITLSNH RKQRMEPLYS LNVSVSDGLF2520
 2521 TSTAQVHIRV LGANLYSPAF SQSTYVAEVR ENVAAGTKVI HVRATDGDPG TYGQISYAII2580
 2581 NDFAKDRFLI DSNGQVITTE RLDRENPLEG DVSIFVRALD GGGRTTFCTV RVIVVDENDN2640
 2641 APQFMTVEYR ASVRADVGRG HFVTQVQAID PDDGANSRIT YSLYSEASVS VADLLEIDPD2700
 2701 NGWMVTKGNF NQLKNTVLSF FVKAVDGGIP VKHSLIPVYI HVLPPETFLP SFTQSQYSFT2760
 2761 IAEDTAIGST VDTLRILPSQ NVRFSTVNGE RPENNKGGVF VIEQETGTIK LDKRLDHETS2820
 2821 PAFHFKVAAT IPLDKVDIVF TVDVDIKVLD LNDNKPVFET SSYDTVIMEG MPVGTKLTQV2880
 2881 RAIDMDWGAN GQVTYSLHSD SQPEKVMEAF NIDSNTGWIS TLKDLDHETD PTFTFSVVAS2940
 2941 DLGEAFSLSS TALVSVRVTD INDNAPVFAQ EVYRGNVKES DPPGEVVAVL STWDRDTSDV3000
 3001 NRQVSYHITG GNPRGRFALG LVQSEWKVYV KRPLDREEQD IYFLNITATD GLFVTQAMVE3060
 3061 VSVSDVNDNS PVCDQVAYTA LLPEDIPSNK IILKVSAKDA DIGSNGDIRY SLYGSGNSEF3120
 3121 YLDPESGELK TLALLDRERI PVYSLMAKAT DGGGRFCQSN IHLILEDVND NPPVFSSDHY3180
 3181 NTCVYENTAT KALLTRVQAV DPDIGINRKV VYSLADSAGG VFSIDSSSGI IILEQPLDRE3240
 3241 QQSSYNISVR ATDQSPGQSL SSLTTVTITV LDINDNPPVF ERRDYLVTVP EDTSPGTQVL3300
 3301 AVFATSKDIG TNAEITYLIR SGNEQGKFKI NPKTGGISVS EVLDYELCKR FYLVVEAKDG3360
 3361 GTPALSAVAT VSINLTDVND NPPKFSQDVY SAVISEDALV GDSVILLIAE DVDSQPNGQI3420
 3421 HFSIVNGDRD NEFTVDPVLG LVKVKKKLDR ERVSGYSLLV QAVDSGIPAM SSTATVNIDI3480
 3481 SDVNDNSPVF TPANYTAVIQ ENKPVGTSIL QLVVTDRDSF HNGPPFSFSI LSGNEEEEFV3540
 3541 LDPHGILRSA VVFQHTESLE YVLCVQAKDS GKPQQVSHTY IRVRVIEEST HKPTAIPLEI3600
 3601 FIVTMEDDFP GGVIGKIHAT DQDMYDVLTF ALKSEQKSLF KVNSHDGKII ALGGLDSGKY3660
 3661 VLNVSVSDGR FQVPIDVVVH VEQLVHEMLQ NTVTIRFENV SPEDFVGLHM HGFRRTLRNA3720
 3721 VLTQKQDSLR IISIQPVTGT NQLDMLFAVE MHSSEFYKPA YLIQKLSNAR RHLENIMRIS3780
 3781 AILEKNCSGL DCQEQHCEQG LSLDSHALMT YSTARISFVC PRFYRNVRCT CNGGLCPGSN3840
 3841 DPCMEKPCPG DMQCVGYEAS RRPFLCQCPP GKLGECSGHT SLSFAGNSYI KYRLSENSKE3900
 3901 EDFKLALRLR TLQSNGIIMY TRANPCIILK IVDGKLWFQL DCGSGPGILG ISGRAVNDGS3960
 3961 WHSVFLELNR NFTSLSLDDS YVERRRAPLY FQTLSTESSI YFGALVQADN IRSLTDTRVT4020
 4021 QVLSGFQGCL DSVILNNNEL PLQNKRSSFA EVVGLTELKL GCVLYPDACE RSPCQHGGSC4080
 4081 TGLPSGGYQC TCLSQFTGRN CESEITACFP NPCRNGGSCD PIGNTFICNC KAGLTGVTCE4140
 4141 EDINECEREE CENGGSCVNV FGSFLCNCTP GYVGQYCGLR PVVVPNIQAG HSYVGKEELI4200
 4201 GIAVVLFVIF ILVVLFIVFR KKVFRKNYSR NNITLVQDPA TAALLNKSNG IPFRNLRGSG4260
 4261 DGRNVYQEVG PPQVPVRPMA YTPCFQSDSR SNLDKIVDGL GGEHQEMTTF HPESPRILTA4320
 4321 RRGVVVCSVA PNLPAVSPCR SDCDSIRKNG WDAGTENKGV DDPGEVTCFA GSNKGSNSEV4380
 4381 QSLSSFQSDS GDDNAYHWDT SDWMPGARLS DIEEVPNYEN QDGGSAHQGS TRELESDYYL4440
 4441 GGYDIDSEYP PPHEEEFLSQ DQLPPPLPED FPDQYEALPP SQPVSLASTL SPDCRRRPQF4500
 4501 HPSQYLPPHP FPNETDLVGP PASCEFSTFA VSMNQGTEPT GPADSVSLSL HNSRGTSSSD4560
 4561 VSANCGFDDS EVAMSDYESV GELSLASLHI PFVETQHQTQ V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle