YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114639494
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.86
Transmembrane Helix	21	40	0.87
Non-Cytoplasmic	41	46	0.62
Transmembrane Helix	47	66	0.70
Cytoplasmic	67	175	0.72
Transmembrane Helix	176	196	0.87
Non-Cytoplasmic	197	232	0.71
Transmembrane Helix	233	252	0.76
Cytoplasmic	253	267	0.86
Transmembrane Helix	268	292	0.87
Non-Cytoplasmic	293	364	0.83
Transmembrane Helix	365	387	0.90
Cytoplasmic	388	393	0.79
Transmembrane Helix	394	414	0.80
Non-Cytoplasmic	415	459	0.54
Transmembrane Helix	460	482	0.79
Cytoplasmic	483	493	0.67
Transmembrane Helix	494	514	0.80
Non-Cytoplasmic	515	521	0.66
Transmembrane Helix	522	541	0.93
Cytoplasmic	542	559	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAASGHGFR GLSPHARDPG CGSSWWEVCG AAAMAAFTIA TGTGNWFSAL ALGVTLLKCL  60
   61 LIPTYHSTDF EVHRNWLAIT HSLPISQWYY EATSEWTLDY PPFFAWFEYI LSHVAKYFDQ 120
  121 EMLNVHNLNY SSSRTLLFQR FSVIFMDVLF VYAVRECCKC IDGKKVGKEL TEKPKFILSV 180
  181 LLLWNFGLLI VDHIHFQYNG FLFGLMLLSI ARLFQKRHME GAFLFAVLLH FKHIYLYVAP 240
  241 AYGVYLLRSY CFTANKPDGS IRWKSFSFVR VISLGLVVFL VSALSLGPFL ALNQLPQVFS 300
  301 RLFPFKRGLC HAYWAPNFWA LYNALDKVLS VIGLKLKFLD PNNIPKASMT SGLVQQFQHT 360
  361 VLPSVTPLAT LICTLIAILP SIFCLWFKPQ GPRGFLRCLT LCALSSFMFG WHVHEKAILL 420
  421 AILPMSLLSV GKAGDASIFL ILTTTGHYSL FPLLFTAPEL PIKILLMLLF TIYSISSLKT 480
  481 LFRKEKPLFN WMETFYLLGL GPLEVCCEFV FPFTSWKVKY PFIPLLLTSV YCAVGVTYAW 540
  541 FKLYVSVLID SAIGKTKKQ