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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114632105
Protein type: Transmembrane
Type Confidence: 0.70
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIKQGEKPS PDLQEQHSRE PEAEVAPRAG ALGWVGAELA PAFGSSIFTS LAFLRSCEGA  60
   61 GKRRGLASGA RVIGCPGPLA KALRAAASRL PRRRQGAPRS ACSAPEPCPA ALCNHRVPAG 120
  121 ADRPSVRLLS AELSFRARNS LCPSRPRATM PRATALGALV SLLLLLPLPR GAGGLGERPD 180
  181 ATADYSELDG EEGTEQQLEH YHDPCKAAVF WGDIALDEDD LKLFHIDKAR DWTKQTVGAT 240
  241 GHSTGGLEEQ ASESSPDTTA MDTGTKEAGK DGWENTTLLH SPGTLHAAAK TFSPRVRRAT 300
  301 TSRTERIWPG GVIPYVIGGN FTGSQRAIFK QAMRHWEKHT CVTFIERTDE ESFIVFSYRT 360
  361 CGCCSYVGRR GGGPQAISIG KNCDKFGIVA HELGHVVGFW HEHTRPDRDQ HVTIIRENIQ 420
  421 PGQEYNFLKM EAGEVSSLGE TYDFDSIMHY ARNTFSRGVF LDTILPRQDD NGVRPTIGQR 480
  481 VRLSQGDIAQ ARKLYKCPAC GETLQDTTGN FSAPGFPNGY PSYSHCVWRI SVTPGEKIVL 540
  541 NFTSMDLFKS RLCWYDYVEV RDGYWRKAPL LGRFCGDKIP EPLVSTDSRL WVEFRSSSNI 600
  601 LGKGFFAVYE ATCGGDINKD AGQIQSPNYP DDYRPSKECV WRIMVSEGFH VGLTFQAFEI 660
  661 ERHDSCAYDY LEVRDGPTEE SALIGHFCGY EKPEDVKSSS NRLWMKFVSD GSINKAGFAA 720
  721 NFFKEVDECS WPDHGGCEHR CVNTLGSYKC ACDPGYELAA DKKMCEVACG GFITKLNGTI 780
  781 TSPGWPKEYP TNKNCVWQVV APAQYRISLQ FEVFELEGND VCKYDFVEVR SGLSPDAKLH 840
  841 GRFCGSETPE VITSQSNNMR VEFKSDNTVS KRGFRAHFFS DKDECAKDNG GCQHECVNTF 900
  901 GSYLCRCRNG YRLHENGHDC KEAGCAHKIS SVEGTLASPN WPDKYPSRRE CTWNISSTAG 960
  961 HRVKLTFNEF EIEQHQECAY DHLEMYDGPD SLAPILGRFC GSKKPDPTVA SGSSMFLRFY1020
 1021 SDASVQRKGF QAVHSTECGG RLKAEVQTKE LYSHAQFGDN NYPSQAHCDW VIVAEDGYGV1080
 1081 ELTFRTFEVE EEADCGYDYM EAYDGYDSSA PRLGRFCGSG PLEEIYSAGD SLMIRFRTDD1140
 1141 TINKKGFHAQ YTSTKFQDAL HMKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle