YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114632415
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKMGELPL DINIQEPRWD QSTFLGRARH FFTVTDPRNL LVSGAQLEAS RNIVQNYRAG  60
   61 VVTPGITEDQ LWRAKYVYDS AFHPDTGEKV VLIGRMSAQV PMNMTITGCM LTFYRQTPTV 120
  121 VFWQWVNQSF NAIVNYSNRS GDTPITVRQL GTAYVSATTG AVATALGLKS LTKHLPPLVG 180
  181 RFVPFAAVAA ANCINIPLMR QRELQVGIPV ADEAGQRLGY SVTAAKQGIF QVVISRICMA 240
  241 IPAMAIPPLI MDTLEKKDFL KVGLVGFCLV FATPLCCALF PQKSSIHMSK LEPELRAQIH 300
  301 EQNPSVEVVY YNKGL

Type	Start	End	Confidence
Cytoplasmic	1	149	0.71
Transmembrane Helix	150	168	0.66
Non-Cytoplasmic	169	177	0.35
Transmembrane Helix	178	199	0.68
Cytoplasmic	200	228	0.58
Transmembrane Helix	229	251	0.78
Non-Cytoplasmic	252	258	0.55
Transmembrane Helix	259	281	0.88
Cytoplasmic	282	315	0.58