YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114631860
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.98
Transmembrane Helix	70	89	0.94
Non-Cytoplasmic	90	99	0.78
Transmembrane Helix	100	118	0.96
Cytoplasmic	119	131	0.85
Transmembrane Helix	132	151	0.96
Non-Cytoplasmic	152	158	0.76
Transmembrane Helix	159	178	0.96
Cytoplasmic	179	186	0.85
Transmembrane Helix	187	206	0.95
Non-Cytoplasmic	207	223	0.86
Transmembrane Helix	224	242	0.96
Cytoplasmic	243	253	0.83
Transmembrane Helix	254	274	0.94
Non-Cytoplasmic	275	285	0.71
Transmembrane Helix	286	303	0.97
Cytoplasmic	304	313	0.82
Transmembrane Helix	314	333	0.94
Non-Cytoplasmic	334	338	0.86
Transmembrane Helix	339	361	0.87
Cytoplasmic	362	365	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPQDSTGVA ELQEPGLPLT DDAPPGATEE PAAAEAAGAP DRGRCWLCLS SPCCSRTEPE  60
   61 AKKKAPCPGL GLFYTLLSAF LFSVGSLFVK KVQDVHAVEI SAFRCVFQML VVIPCLIYRK 120
  121 TGFIGPKGQR IFLILRGVLG STAMMLIYYA YQTMSLADAT VITFSSPVFT SIFAWICLKE 180
  181 KYSPWDALFT VFTITGVILI VRPPFLFGSD TSGMEESYSG HLKGTFAAIG SAVFAASTLV 240
  241 ILRKMGKSVD YFLSIWYYVV LGLVESVIIL SVLGEWSLPY CGLDRLFLVF IGLFGLGGQI 300
  301 FITKALQIEK AGPVAIMKTM DVVFAFIFQI IFFNNVPTWW TVGGALCVVA SNVGAAIRKW 360
  361 YQSSK