YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114629049
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIFKSLHRY VIFISCIIVI NWYMSRVHGM HPKETTRQLS LAVKDGLIVE TLTVGCKGSK  60
   61 AGIEQEGYWL PGDEIDWETE NHDWYCFECH LPGEVLICDL CFRVYHSKCL SDEFRLRDSS 120
  121 SPWQCPVCRS IKKKNTNKQE MGTYLRFIVS RMKERAIDLN KKGKDNKHPM YRRLVHSAVD 180
  181 VPTIQEKVNE GKYRSYEEFK ADAQLLLHNT VIFYGADSEQ ADIARMLYKD TCHELDELQL 240
  241 CKNCFYLSNA RPDNWFCYPC IPNHELVWAK MKGFGFWPAK VMQKEDNQVD VRFFGHHHQR 300
  301 AWIPSENIQD ITVNIHRLHV KRSMGWKKAC DELELHQRFL REGRFWKSKN EDRGEEEAES 360
  361 SISSTSNEQL KVTQEPRAKK GRRNQSVEPK KEEPEPETEA VSSSQEIPTM PQPIEKVSVS 420
  421 TQTKKLSASS PRMLHRSTQT TNDGVCQSMC HDKYTKIFND FKDRMKSDHK RETERVVREA 480
  481 LEKLRSEMEE EKRQAVNKAV ANMQGEMDRK CKQVKEKCKE EFVEEIKKLA TQHKQLISQT 540
  541 KKKQWCYNCE EEAMYHCCWN TSYCSIKCQQ EHWHAEHKRT CRRKR

Type	Start	End	Confidence
Cytoplasmic	1	9	0.72
Transmembrane Helix	10	30	0.78
Non-Cytoplasmic	31	585	0.98