YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114625612
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKAPQMPVN KEAEVTFCGG PTLGCPLCEG SRPTHGVGNS AASEPIHGFA WPGLVCSRCW  60
   61 WGAGTVELGP RRPGGSNPEE KANSIPEMRP NSGSVPKDEF SGHHLPRLRE ASPHVTRAQA 120
  121 NHCRWGRTGR GQLYLLEGAH GHRSPSKVSK KLQQERSQGV PCLGQNNSLG NMDGSHSLEK 180
  181 ELESRHPPQQ TQLHVALSSA RQQYCWGRDP CQPRRHQSQR QEMWHSGEPP RRLCGFYTAQ 240
  241 ATSTVSATEV QSKTQRRVLW GHRRRAPSLV GPRRTVSGPR GWGRPKLRAL SLEPAAEARA 300
  301 RSGPDPGGLG GRTMDSGTEE YELNGGLPPG TPGSPDASPA RGGWRHGPIN VNHYANKKSA 360
  361 AESMLDIALL MANASQLKAV VEQGPSFAFY VPLVVLISIS LVLQIGVGVL LIFLVKYDLN 420
  421 NPAKHAKLDF LNNLATGLVF IIVVVNIFIT AFGVQKPLMD MAPQQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	389	0.90
Transmembrane Helix	390	415	0.89
Cytoplasmic	416	429	0.88
Transmembrane Helix	430	454	0.87
Non-Cytoplasmic	455	465	0.90