YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114624278
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQAISFAK DFLAGGITAA ISKTAVASIK RVQLLLQMQH ASMPMAAAKQ CKGIVDCIVR  60
   61 IPKDQGVLSF WRGNLANVIR YSPTQALNFA FKDKYKQIFL AGVDKHTQFC RCFAGNLASG 120
  121 GTAVVYPLDF TRTRLAADVG KSGTEREFRG QGDCLVKITK SDGIRGLYQG FSVSVQGIII 180
  181 YRAAYFGVYD TAKASDALPS LSAPALLLSA RSAARSAARQ ATMTEQAISF AKDFLAGGIT 240
  241 AAISKTAVAS IKRVQLLLQM QHASMPMAAA KQCKGIVDCI VRIPKDQGVL SFWRGNLANV 300
  301 IRYSPTQALN FAFKDKYKQI FLAGVDKHTQ FCRCFAGNLA SGGTAVVYPL DFTRTRLAAD 360
  361 VGKSGTEREF RGQGDCLVKI SKSDGIRGFY QGFSVSVQAI IIYQAAYFRV YDTAKGMFPD 420
  421 PKNTHILVSW MIAQTVTAVA GVVSYPFDTV RRRTMMQSRS KGADSMYTGT VDCWRKIFRD 480
  481 ERGEAFFKGV WSNALRGMGV GVGFVLVPYD ELKVS

Type	Start	End	Confidence
Cytoplasmic	1	387	0.53
Transmembrane Helix	388	407	0.60
Non-Cytoplasmic	408	425	0.91
Transmembrane Helix	426	447	0.83
Cytoplasmic	448	515	0.67