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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114624439
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.78
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPSLLLLV AALAGGVRPP GGRNLTLAVV LPEHNLSYAW AWPRVGPAVA LAVEALGRAL  60
   61 PVDLRFVSSE LEGACSEYLA PLSAVDLKLY HDPDLLLGPG CVYPAASVAR FASHWRLPLL 120
  121 TAGAVASGFS AKNDHYRTLV RTGPSAPKLG EFVVTLHGHF NWTARAALLY LDARTDDRPH 180
  181 YFTIEGVFEA LQGSNLSVQH QVYAREPGGP EQATHFIRAN GRIVYICGPL EMLHEILLQA 240
  241 QRENLTNGDY VFFYLDVFGE SLRAGPTRAT GRPWQDNRTR EQAQALREAF QTVLVITYRE 300
  301 PPNPEYQEFQ NRLLIRARED FGVELGPSLM NLIAGCFYDG ILLYAEVLNE TIQEGGTRED 360
  361 GLRIVEKMQG RRYHGVTGLV VMDKNNDRET DFVLWAMGDL DSGDFQPAAH YSGAEKQIWW 420
  421 TGRPIPWVKG APPSDNPPCA FDLDDPSCDK TPLSTLAIVA LGTGITFIMF GVSSFLIFRK 480
  481 LMLEKELASM LWRIRWEELQ FGNSERYHKG AGSRLTLSLR GSSYGSLMTA HGKYQIFANT 540
  541 GHFKGNVVAI KHVNKKRIEL TRQVLFELKH MRDVQFNHLT RFIGACIDPP NICIVTEYCP 600
  601 RGSLQGMAFL HNSIISSHGS LKSSNCVVDS RFVLKITDYG LASFRSTAEP DDSHALYAKK 660
  661 LWTAPELLSG NPLPTTGMQK ADVYSFGIIL QEIALRSGPF YLEGLDLSPK EIVQKVRNGQ 720
  721 RPHFRPSIDR TQLNEELVLL MERCWAQDPA ERPDFGQIKG FIRRFNKEGG TSILDNLLLR 780
  781 MEQYANNLEK LVEERTQAYL EEKRKAEALL YQILPHSVAE QLKRGETVQA EAFDSVTIYF 840
  841 SDIVGFTALS AESTPMQVVT LLNDLYTCFD AIIDNFDVYK VETIGDAYMV VSGLPGRNGQ 900
  901 RHAPEIARMA LALLDAVSSF RIRHRPHDQL RLRIGVHTGP VCAGVVGLKM PRYCLFGDTV 960
  961 NTASRMESNG QALKIHVSST TKDALDELGC FQLELRGDVE MKGKGKMRTY WLLGERKGPP1020
 1021 GLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle