YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114622144
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHEKSFLVF WGNYPPPNPG YPGGPQPPMP PYAQPPYPGA PYPQPPFQPS PYGQPGYPHG  60
   61 PSPYPQGGYP QGPYPQGGYP QGPYPQESPF PPNPYGQPQV FPGQDPDSPQ HGNYQEEGPP 120
  121 SYYDNQDFPA TNWDDKSIRQ AFIRKVFLVL TLQLSVTLST VSVFTFVAEV KGFVRENVWT 180
  181 YYVSYAVFFI SLIVLSCCGD FRRKHPWNLV ALSVLTASLS YMVGMIASFY NTEAVIMAVG 240
  241 ITTAVCFTVV IFSMQTRYDF TSCMGVLLVS MVVLFIFAIL CIFIRNRILE IVYASLGALL 300
  301 FTCFLAVDTQ LLLGNKQLSL SPEEYVFAAL NLYTDIINIF LYILTIIGRA KE

Type	Start	End	Confidence
Cytoplasmic	1	145	0.98
Transmembrane Helix	146	168	0.93
Non-Cytoplasmic	169	177	0.91
Transmembrane Helix	178	199	0.91
Cytoplasmic	200	206	0.85
Transmembrane Helix	207	228	0.87
Non-Cytoplasmic	229	233	0.76
Transmembrane Helix	234	254	0.84
Cytoplasmic	255	262	0.68
Transmembrane Helix	263	284	0.94
Non-Cytoplasmic	285	290	0.70
Transmembrane Helix	291	313	0.86
Cytoplasmic	314	324	0.73
Transmembrane Helix	325	348	0.69
Non-Cytoplasmic	349	352	0.52